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    LOC105389628 armadillo segment polarity protein [ Plutella xylostella (diamondback moth) ]

    Gene ID: 105389628, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC105389628
    Gene description
    armadillo segment polarity protein
    Locus tag
    PLXY1_LOCUS13290
    See related
    EnsemblRapid:ENSPXYG00000000638
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Plutella xylostella
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Yponomeutoidea; Plutellidae; Plutella
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC105389628 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    103 current ilPluXylo3.1 (GCF_932276165.1) 10 NC_063990.1 (3593892..3607276, complement)
    102 previous assembly Haplomerged_assembly (GCF_905116875.1) Unplaced Scaffold NW_024011342.1 (3510476..3524193, complement)

    Chromosome 10 - NC_063990.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125489091 Neighboring gene uncharacterized LOC125489107 Neighboring gene uncharacterized LOC105389620 Neighboring gene uncharacterized LOC125489065

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The endoparasitoid, Cotesia vestalis, regulates host physiology by reprogramming the neuropeptide transcriptional network. Shi M, et al. Sci Rep, 2015 Feb 2. PMID 25640113, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-catenin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein phosphatase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    armadillo segment polarity protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Plutella xylostella Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ilPluXylo3.1

    Genomic

    1. NC_063990.1 Reference ilPluXylo3.1

      Range
      3593892..3607276 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038117754.2 → XP_037973682.1  armadillo segment polarity protein isoform X2

      UniProtKB/TrEMBL
      A0A8S4DC83
      Related
      ENSPXYP00000000597.1, ENSPXYT00000001066.1
      Conserved Domains (3) summary
      COG5064
      Location:241 → 464
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:412 → 437
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:601 → 638
      Arm; Armadillo/beta-catenin-like repeat

    2. XM_038117752.2 → XP_037973680.1  armadillo segment polarity protein isoform X1

      UniProtKB/TrEMBL
      A0A8S4DC83
      Related
      ENSPXYP00000000571.1, ENSPXYT00000001022.1
      Conserved Domains (3) summary
      COG5064
      Location:241 → 465
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:413 → 438
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:602 → 639
      Arm; Armadillo/beta-catenin-like repeat

    3. XM_038117756.2 → XP_037973684.1  armadillo segment polarity protein isoform X4

      UniProtKB/TrEMBL
      A0A8S4DC83
      Related
      ENSPXYP00000000582.1, ENSPXYT00000001040.1
      Conserved Domains (3) summary
      COG5064
      Location:241 → 465
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:413 → 438
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:602 → 639
      Arm; Armadillo/beta-catenin-like repeat

    4. XM_038117755.2 → XP_037973683.1  armadillo segment polarity protein isoform X3

      UniProtKB/TrEMBL
      A0A8S4DC83
      Related
      ENSPXYP00000000562.1, ENSPXYT00000001006.1
      Conserved Domains (3) summary
      COG5064
      Location:241 → 465
      SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
      sd00043
      Location:413 → 438
      ARM; armadillo repeat [structural motif]
      pfam00514
      Location:602 → 639
      Arm; Armadillo/beta-catenin-like repeat
    Nucleotide Protein
    Heading Accession and Version

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