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    LOC6620240 defective chorion-1 protein, FC125 isoform [ Drosophila sechellia ]

    Gene ID: 6620240, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6620240
    Gene description
    defective chorion-1 protein, FC125 isoform
    Locus tag
    Dsec_GM11970
    See related
    EnsemblRapid:LOC6620240
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila sechellia
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    GM11970; GM11970-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6620240 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current ASM438219v1 (GCF_004382195.1) X NC_045954.1 (7576398..7582247, complement)

    Chromosome X - NC_045954.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116802115 Neighboring gene Ionotropic receptor 7b Neighboring gene Ionotropic receptor 7c Neighboring gene Ionotropic receptor 7d

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045954.1 Chromosome X Reference ASM438219v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of egg chorion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chorion-containing eggshell formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in egg chorion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    defective chorion-1 protein, FC106 isoform; defective chorion-1 protein, FC125 isoform
    Names
    Dsec\GM11970
    Dsec\GM11970-PA
    dsec_GLEANR_12379

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM438219v1

    Genomic

    1. NC_045954.1 Reference ASM438219v1

      Range
      7576398..7582247 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032725851.1 → XP_032581742.1  defective chorion-1 protein, FC125 isoform isoform X1

      UniProtKB/TrEMBL
      B4IL40
      Related
      XP_032581742.1, XM_032725851.1
      Conserved Domains (2) summary
      pfam04626
      Location:767 → 895
      DEC-1_C; Dec-1 protein, C terminal region
      pfam04625
      Location:74 → 479
      DEC-1_N; DEC-1 protein, N-terminal region

    2. XM_032725852.1 → XP_032581743.1  defective chorion-1 protein, FC106 isoform isoform X2

      Related
      XP_032581743.1, XM_032725852.1
      Conserved Domains (2) summary
      pfam04626
      Location:767 → 895
      DEC-1_C; Dec-1 protein, C terminal region
      pfam04625
      Location:74 → 479
      DEC-1_N; DEC-1 protein, N-terminal region
    Nucleotide Protein Strain
    Heading Accession and Version

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