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    LOC100157935 cytochrome c oxidase subunit 8C, mitochondrial [ Sus scrofa (pig) ]

    Gene ID: 100157935, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC100157935
    Gene description
    cytochrome c oxidase subunit 8C, mitochondrial
    See related
    Ensembl:ENSSSCG00000054196
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Restricted expression toward ovary (RPKM 11.5) See more
    Orthologs
    human mouse all
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    Genomic context

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    See LOC100157935 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (114727841..114729102)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (121313089..121314323)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene ubiquitin protein ligase E3 component n-recognin 7 Neighboring gene BTB domain containing 7 Neighboring gene unc-79 homolog, NALCN channel complex subunit Neighboring gene proline rich membrane anchor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in mitochondrial electron transport, cytochrome c to oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome c oxidase subunit 8C, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      114727841..114729102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001927411.4 → XP_001927446.1  cytochrome c oxidase subunit 8C, mitochondrial

      UniProtKB/TrEMBL
      A0A4X1SL06, F1SD52
      Related
      ENSSSCP00000077270.1, ENSSSCT00000098761.1
      Conserved Domains (1) summary
      pfam02285
      Location:28 → 69
      COX8; Cytochrome oxidase c subunit VIII
    Nucleotide Protein
    Heading Accession and Version

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