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    ARNT aryl hydrocarbon receptor nuclear translocator [ Chlorocebus sabaeus (green monkey) ]

    Gene ID: 103247208, updated on 11-Mar-2024

    Summary

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    Gene symbol
    ARNT
    Gene description
    aryl hydrocarbon receptor nuclear translocator
    See related
    Ensembl:ENSCSAG00000018038
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chlorocebus sabaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
    Orthologs
    human mouse all
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    Genomic context

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    See ARNT in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666038.1 (12405916..12471198)
    100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 20 Unlocalized Scaffold NW_006735561.1 (1314855..1379049, complement)

    NW_023666038.1Genomic Context describing neighboring genes Neighboring gene SET domain bifurcated histone lysine methyltransferase 1 Neighboring gene cytochrome c-like Neighboring gene cortexin domain containing 2 Neighboring gene U6 spliceosomal RNA Neighboring gene cathepsin K Neighboring gene cathepsin S

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of aryl hydrocarbon receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aryl hydrocarbon receptor nuclear translocator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Vero_WHO_p1.0

    Genomic

    1. NW_023666038.1 Reference Vero_WHO_p1.0

      Range
      12405916..12471198
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037997995.1 → XP_037853923.1  aryl hydrocarbon receptor nuclear translocator isoform X1

      UniProtKB/TrEMBL
      A0A0D9RZL8
      Conserved Domains (3) summary
      cd18947
      Location:142 → 206
      bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
      pfam00989
      Location:219 → 333
      PAS; PAS fold
      pfam14598
      Location:426 → 526
      PAS_11; PAS domain

    2. XM_037997996.1 → XP_037853924.1  aryl hydrocarbon receptor nuclear translocator isoform X2

      UniProtKB/TrEMBL
      A0A0D9RZL8
      Conserved Domains (3) summary
      cd18947
      Location:142 → 206
      bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
      pfam00989
      Location:219 → 333
      PAS; PAS fold
      pfam14598
      Location:426 → 526
      PAS_11; PAS domain

    3. XM_008019284.2 → XP_008017475.2  aryl hydrocarbon receptor nuclear translocator isoform X3

      UniProtKB/TrEMBL
      A0A0D9RZL8
      Conserved Domains (3) summary
      cd18947
      Location:142 → 206
      bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
      pfam00989
      Location:219 → 325
      PAS; PAS fold
      pfam14598
      Location:418 → 518
      PAS_11; PAS domain

    4. XM_037997997.1 → XP_037853925.1  aryl hydrocarbon receptor nuclear translocator isoform X4

      UniProtKB/TrEMBL
      A0A0D9RZL8
      Conserved Domains (3) summary
      cd18947
      Location:71 → 135
      bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
      pfam00989
      Location:148 → 262
      PAS; PAS fold
      pfam14598
      Location:355 → 455
      PAS_11; PAS domain

    5. XM_008019286.2 → XP_008017477.2  aryl hydrocarbon receptor nuclear translocator isoform X5

      UniProtKB/TrEMBL
      A0A0D9RZL8
      Conserved Domains (3) summary
      cd18947
      Location:71 → 135
      bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
      pfam00989
      Location:148 → 254
      PAS; PAS fold
      pfam14598
      Location:347 → 447
      PAS_11; PAS domain

    6. XM_008019287.2 → XP_008017478.2  aryl hydrocarbon receptor nuclear translocator isoform X6

      UniProtKB/TrEMBL
      A0A0D9RZL8
      Conserved Domains (3) summary
      cd18947
      Location:71 → 135
      bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
      pfam00989
      Location:148 → 254
      PAS; PAS fold
      pfam14598
      Location:347 → 447
      PAS_11; PAS domain

    7. XM_037997998.1 → XP_037853926.1  aryl hydrocarbon receptor nuclear translocator isoform X7

      UniProtKB/TrEMBL
      A0A0D9RZL8
      Conserved Domains (3) summary
      cd18947
      Location:85 → 149
      bHLH-PAS_ARNT; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator (ARNT) and similar proteins
      pfam00989
      Location:162 → 268
      PAS; PAS fold
      pfam14598
      Location:361 → 461
      PAS_11; PAS domain
    Nucleotide Protein
    Heading Accession and Version

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