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    FAF1 Fas associated factor 1 [ Chelonia mydas (Green sea turtle) ]

    Gene ID: 102930279, updated on 10-Mar-2024

    Summary

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    Gene symbol
    FAF1
    Gene description
    Fas associated factor 1
    Locus tag
    UY3_09258
    See related
    EnsemblRapid:ENSCMYG00015014213
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonia mydas
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
    Orthologs
    human mouse all
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    Genomic context

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    See FAF1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current rCheMyd1.pri.v2 (GCF_015237465.2) 8 NC_057854.1 (96413224..96715406)
    102 previous assembly rCheMyd1.pri (GCF_015237465.1) 8 NC_051248.1 (96413248..96716660)

    Chromosome 8 - NC_057854.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119566883 Neighboring gene ring finger protein 11 Neighboring gene cyclin dependent kinase inhibitor 2C Neighboring gene uncharacterized LOC122466787 Neighboring gene DMRT like family A2 Neighboring gene uncharacterized LOC122466872

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NF-kappaB binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FAS-associated factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rCheMyd1.pri.v2 Primary Assembly

    Genomic

    1. NC_057854.1 Reference rCheMyd1.pri.v2 Primary Assembly

      Range
      96413224..96715406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027824594.3 → XP_027680395.1  FAS-associated factor 1 isoform X1

      Related
      ENSCMYP00015022021.1, ENSCMYT00015026664.1

    2. XM_037907794.2 → XP_037763722.1  FAS-associated factor 1 isoform X3

      Related
      ENSCMYP00015022016.1, ENSCMYT00015026655.1
      Conserved Domains (5) summary
      cd02990
      Location:336 → 471
      UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
      cd01771
      Location:554 → 633
      UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins
      cd17129
      Location:85 → 157
      Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
      cd17130
      Location:177 → 252
      Ubl2_FAF1; ubiquitin-like (Ubl) domain 2 found in FAS-associated factor 1 (FAF1) and similar proteins
      pfam09731
      Location:474 → 582
      Mitofilin; Mitochondrial inner membrane protein

    3. XM_043552605.1 → XP_043408540.1  FAS-associated factor 1 isoform X2

      Related
      ENSCMYP00015022012.1, ENSCMYT00015026649.1
      Conserved Domains (6) summary
      cd02990
      Location:352 → 487
      UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
      cd14413
      Location:14 → 46
      UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins
      cd17129
      Location:101 → 173
      Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
      cd17130
      Location:193 → 268
      Ubl2_FAF1; ubiquitin-like (Ubl) domain 2 found in FAS-associated factor 1 (FAF1) and similar proteins
      pfam09731
      Location:490 → 598
      Mitofilin; Mitochondrial inner membrane protein
      cl28922
      Location:570 → 632
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    4. XM_037907795.2 → XP_037763723.1  FAS-associated factor 1 isoform X4

      Conserved Domains (5) summary
      cd02990
      Location:252 → 387
      UAS_FAF1; UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. ...
      cd01771
      Location:470 → 549
      UBX_UBXN3A; Ubiquitin regulatory domain X (UBX) found in FAS associated factor 1 (FAF1, also known as UBXN3A) and similar proteins
      cd17129
      Location:1 → 73
      Ubl1_FAF1; ubiquitin-like (Ubl) domain 1 found in FAS-associated factor 1 (FAF1) and similar proteins
      cd17130
      Location:93 → 168
      Ubl2_FAF1; ubiquitin-like (Ubl) domain 2 found in FAS-associated factor 1 (FAF1) and similar proteins
      pfam09731
      Location:390 → 498
      Mitofilin; Mitochondrial inner membrane protein
    Nucleotide Protein
    Heading Accession and Version

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