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    PPFIA4 PTPRF interacting protein alpha 4 [ Sturnira hondurensis ]

    Gene ID: 119003877, updated on 30-Mar-2024

    Summary

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    Gene symbol
    PPFIA4
    Gene description
    PTPRF interacting protein alpha 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sturnira hondurensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yangochiroptera; Phyllostomidae; Stenodermatinae; Sturnira
    Orthologs
    human mouse all
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    Genomic context

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    See PPFIA4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    100.20210611 current WHU_Shon_v2.1 (GCF_014824575.2) Unplaced Scaffold NW_023525916.1 (2513295..2542037)

    NW_023525916.1Genomic Context describing neighboring genes Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like Neighboring gene transmembrane protein 183A Neighboring gene myogenin Neighboring gene adenosine A1 receptor Neighboring gene myosin binding protein H

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_023525916 Unplaced Scaffold Reference WHU_Shon_v2.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in synapse organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in presynaptic active zone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    liprin-alpha-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sturnira hondurensis Updated Annotation Release 100.20210611

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference WHU_Shon_v2.1

    Genomic

    1. NW_023525916.1 Reference WHU_Shon_v2.1

      Range
      2513295..2542037
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037070467.1 → XP_036926362.1  liprin-alpha-4 isoform X1

      Conserved Domains (5) summary
      PRK02224
      Location:387 → 622
      PRK02224; DNA double-strand break repair Rad50 ATPase
      cd09562
      Location:841 → 911
      SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
      cd09565
      Location:958 → 1023
      SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
      cd09568
      Location:1043 → 1114
      SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
      COG1196
      Location:145 → 491
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_037070468.1 → XP_036926363.1  liprin-alpha-4 isoform X2

      Conserved Domains (5) summary
      PRK02224
      Location:387 → 622
      PRK02224; DNA double-strand break repair Rad50 ATPase
      cd09562
      Location:841 → 911
      SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
      cd09565
      Location:949 → 1014
      SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
      cd09568
      Location:1034 → 1105
      SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
      COG1196
      Location:145 → 491
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. XM_037070469.1 → XP_036926364.1  liprin-alpha-4 isoform X3

      Conserved Domains (4) summary
      cd09562
      Location:841 → 911
      SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
      cd09565
      Location:958 → 1023
      SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
      cd09568
      Location:1043 → 1114
      SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
      COG1196
      Location:145 → 491
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    4. XM_037070470.1 → XP_036926365.1  liprin-alpha-4 isoform X4

      Conserved Domains (4) summary
      cd09562
      Location:841 → 911
      SAM_liprin-alpha1,2,3,4_repeat1; SAM domain of liprin-alpha1,2,3,4 proteins repeat 1
      cd09565
      Location:949 → 1014
      SAM_liprin-alpha1,2,3,4_repeat2; SAM domain of liprin-alpha1,2,3,4 proteins repeat 2
      cd09568
      Location:1034 → 1105
      SAM_liprin-alpha1,2,3,4_repeat3; SAM domain of liprin-alpha1,2,3,4 proteins repeat 3
      COG1196
      Location:145 → 491
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein
    Heading Accession and Version

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