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    CPNE5 copine 5 [ Manis javanica (Malayan pangolin) ]

    Gene ID: 108385912, updated on 14-Mar-2024

    Summary

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    Gene symbol
    CPNE5
    Gene description
    copine 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Manis javanica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Pholidota; Manidae; Manis
    Orthologs
    human mouse all
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    Genomic context

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    See CPNE5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    101 current YNU_ManJav_2.0 (GCF_014570535.1) Unplaced Scaffold NW_023435934.1 (3216478..3305027, complement)
    100 previous assembly ManJav1.0 (GCF_001685135.1) Unplaced Scaffold NW_016557449.1 (161999..251702, complement)

    NW_023435934.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108385908 Neighboring gene uncharacterized LOC118970123 Neighboring gene uncharacterized LOC118969708 Neighboring gene peptidylprolyl isomerase like 1 Neighboring gene chromosome unknown C6orf89 homolog Neighboring gene peptidase inhibitor 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to calcium ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    copine-5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Manis javanica Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference YNU_ManJav_2.0 Primary Assembly

    Genomic

    1. NW_023435934.1 Reference YNU_ManJav_2.0 Primary Assembly

      Range
      3216478..3305027 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017643532.2 → XP_017499021.2  copine-5 isoform X2

      Conserved Domains (3) summary
      cd04047
      Location:177 → 288
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:23 → 137
      C2A_Copine; C2 domain first repeat in Copine
      cd01459
      Location:298 → 554
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...

    2. XM_017643531.2 → XP_017499020.2  copine-5 isoform X1

      Conserved Domains (3) summary
      cd04047
      Location:194 → 305
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:23 → 137
      C2A_Copine; C2 domain first repeat in Copine
      cd01459
      Location:315 → 571
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...

    3. XM_037004377.1 → XP_036860272.1  copine-5 isoform X3

      Conserved Domains (1) summary
      cd01459
      Location:2 → 262
      vWA_copine_like; VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. ...
    Nucleotide Protein
    Heading Accession and Version

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