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    Nap1l3 nucleosome assembly protein 1-like 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 170914, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Nap1l3provided by RGD
    Official Full Name
    nucleosome assembly protein 1-like 3provided by RGD
    Primary source
    RGD:620990
    See related
    EnsemblRapid:ENSRNOG00000029087 AllianceGenome:RGD:620990
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in nucleosome assembly. Predicted to be located in chromatin. Predicted to be active in nucleus. Orthologous to human NAP1L3 (nucleosome assembly protein 1 like 3). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See Nap1l3 in Genome Data Viewer
    Location:
    Xq31
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (92607628..92610426, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (88347595..88350393, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (95059334..95062132, complement)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene sphingomyelin synthase 1, pseudogene 1 Neighboring gene KAT8 regulatory NSL complex subunit 2, pseudogene 2 Neighboring gene U7 small nuclear RNA Neighboring gene josephin-1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning, expression pattern and mapping to Xq of NAP1L3, a gene encoding a peptide homologous to human and yeast nucleosome assembly proteins. Watanabe TK, et al. Cytogenet Cell Genet, 1996. PMID 8976385
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC124570

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables histone binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    nucleosome assembly protein 1-like 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133402.2 → NP_596893.1  nucleosome assembly protein 1-like 3

      See identical proteins and their annotated locations for NP_596893.1

      Status: PROVISIONAL

      Source sequence(s)
      BC101932
      UniProtKB/Swiss-Prot
      Q924R9
      UniProtKB/TrEMBL
      A6IVC2
      Related
      ENSRNOP00000048930.3, ENSRNOT00000049956.5
      Conserved Domains (3) summary
      pfam00956
      Location:345 → 516
      NAP; Nucleosome assembly protein (NAP)
      pfam08597
      Location:204 → 266
      eIF3_subunit; Translation initiation factor eIF3 subunit
      cl08298
      Location:109 → 149
      NAP; Nucleosome assembly protein (NAP)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      92607628..92610426 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q924R9.1 GenPept UniProtKB/Swiss-Prot:Q924R9

    Gene LinkOut

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