U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    aplp1 amyloid beta (A4) precursor-like protein 1 [ Megalops cyprinoides (Indo-Pacific tarpon) ]

    Gene ID: 118784051, updated on 20-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    aplp1
    Gene description
    amyloid beta (A4) precursor-like protein 1
    See related
    EnsemblRapid:ENSMCNG00005010052
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Megalops cyprinoides
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Elopiformes; Megalopidae; Megalops
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See aplp1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    100 current fMegCyp1.pri (GCF_013368585.1) 10 NC_050592.1 (6431012..6465779)

    Chromosome 10 - NC_050592.1Genomic Context describing neighboring genes Neighboring gene kirre like nephrin family adhesion molecule 3, like Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene urokinase plasminogen activator surface receptor-like Neighboring gene zinc finger and BTB domain containing 32

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_050592.1 Chromosome 10 Reference fMegCyp1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-2A adrenergic receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables alpha-2B adrenergic receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables alpha-2C adrenergic receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heparin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transition metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    amyloid-like protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Megalops cyprinoides Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fMegCyp1.pri Primary Assembly

    Genomic

    1. NC_050592.1 Reference fMegCyp1.pri Primary Assembly

      Range
      6431012..6465779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036538032.1 → XP_036393925.1  amyloid-like protein 1 isoform X2

      Related
      ENSMCNP00005024839.1, ENSMCNT00005025316.1
      Conserved Domains (3) summary
      smart00006
      Location:34 → 192
      A4_EXTRA; amyloid A4
      pfam12925
      Location:333 → 514
      APP_E2; E2 domain of amyloid precursor protein
      cd21708
      Location:629 → 713
      JMTM_APLP1; juxtamembrane and transmembrane (JMTM) domain found in amyloid-like protein 1 (APLP-1) and similar proteins

    2. XM_036538034.1 → XP_036393927.1  amyloid-like protein 1 isoform X4

      Conserved Domains (3) summary
      smart00006
      Location:34 → 192
      A4_EXTRA; amyloid A4
      pfam12925
      Location:333 → 514
      APP_E2; E2 domain of amyloid precursor protein
      cd21708
      Location:625 → 709
      JMTM_APLP1; juxtamembrane and transmembrane (JMTM) domain found in amyloid-like protein 1 (APLP-1) and similar proteins

    3. XM_036538038.1 → XP_036393931.1  amyloid-like protein 1 isoform X7

      Conserved Domains (3) summary
      smart00006
      Location:34 → 192
      A4_EXTRA; amyloid A4
      pfam12925
      Location:314 → 495
      APP_E2; E2 domain of amyloid precursor protein
      cd21708
      Location:606 → 690
      JMTM_APLP1; juxtamembrane and transmembrane (JMTM) domain found in amyloid-like protein 1 (APLP-1) and similar proteins

    4. XM_036538031.1 → XP_036393924.1  amyloid-like protein 1 isoform X1

      Conserved Domains (3) summary
      smart00006
      Location:34 → 192
      A4_EXTRA; amyloid A4
      pfam12925
      Location:333 → 514
      APP_E2; E2 domain of amyloid precursor protein
      cd21708
      Location:629 → 714
      JMTM_APLP1; juxtamembrane and transmembrane (JMTM) domain found in amyloid-like protein 1 (APLP-1) and similar proteins

    5. XM_036538033.1 → XP_036393926.1  amyloid-like protein 1 isoform X3

      Conserved Domains (3) summary
      smart00006
      Location:34 → 192
      A4_EXTRA; amyloid A4
      pfam12925
      Location:333 → 514
      APP_E2; E2 domain of amyloid precursor protein
      cd21708
      Location:625 → 710
      JMTM_APLP1; juxtamembrane and transmembrane (JMTM) domain found in amyloid-like protein 1 (APLP-1) and similar proteins

    6. XM_036538035.1 → XP_036393928.1  amyloid-like protein 1 isoform X5

      Conserved Domains (3) summary
      smart00006
      Location:34 → 192
      A4_EXTRA; amyloid A4
      pfam12925
      Location:314 → 495
      APP_E2; E2 domain of amyloid precursor protein
      cd21708
      Location:610 → 695
      JMTM_APLP1; juxtamembrane and transmembrane (JMTM) domain found in amyloid-like protein 1 (APLP-1) and similar proteins

    7. XM_036538036.1 → XP_036393929.1  amyloid-like protein 1 isoform X6

      Related
      ENSMCNP00005024807.1, ENSMCNT00005025284.1
      Conserved Domains (3) summary
      smart00006
      Location:34 → 192
      A4_EXTRA; amyloid A4
      pfam12925
      Location:314 → 495
      APP_E2; E2 domain of amyloid precursor protein
      cd21708
      Location:606 → 691
      JMTM_APLP1; juxtamembrane and transmembrane (JMTM) domain found in amyloid-like protein 1 (APLP-1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.