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    RNF123 ring finger protein 123 [ Rousettus aegyptiacus (Egyptian rousette) ]

    Gene ID: 107513355, updated on 30-Mar-2024

    Summary

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    Gene symbol
    RNF123
    Gene description
    ring finger protein 123
    Locus tag
    HJG63_016771
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rousettus aegyptiacus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Yinpterochiroptera; Pteropodoidea; Pteropodidae; Rousettinae; Rousettus
    Orthologs
    human mouse all
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    Genomic context

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    See RNF123 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    41
    Annotation release Status Assembly Chr Location
    101 current mRouAeg1.p (GCF_014176215.1) Unplaced Scaffold NW_023416307.1 (155590916..155619494)
    100 previous assembly Raegyp2.0 (GCF_001466805.2) Unplaced Scaffold NW_015494516.1 (1347157..1375817)

    NW_023416307.1Genomic Context describing neighboring genes Neighboring gene protein bassoon-like Neighboring gene bassoon presynaptic cytomatrix protein Neighboring gene acylaminoacyl-peptide hydrolase Neighboring gene macrophage stimulating 1 Neighboring gene 5S ribosomal RNA Neighboring gene adhesion molecule with Ig like domain 3 Neighboring gene GDP-mannose pyrophosphorylase B Neighboring gene aminoacyl tRNA synthase complex-interacting multifunctional protein 2-like Neighboring gene inositol hexakisphosphate kinase 1 Neighboring gene elongation factor 1-alpha 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNF123

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rousettus aegyptiacus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mRouAeg1.p

    Genomic

    1. NW_023416307.1 Reference mRouAeg1.p

      Range
      155590916..155619494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036219771.1 → XP_036075664.1  E3 ubiquitin-protein ligase RNF123 isoform X4

      UniProtKB/TrEMBL
      A0A7J8HV96
      Conserved Domains (2) summary
      cd12882
      Location:122 → 249
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
      cl17238
      Location:1352 → 1370
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_036219770.1 → XP_036075663.1  E3 ubiquitin-protein ligase RNF123 isoform X4

      UniProtKB/TrEMBL
      A0A7J8HV96
      Conserved Domains (2) summary
      cd12882
      Location:122 → 249
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
      cl17238
      Location:1352 → 1370
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. XM_036219768.1 → XP_036075661.1  E3 ubiquitin-protein ligase RNF123 isoform X4

      UniProtKB/TrEMBL
      A0A7J8HV96
      Conserved Domains (2) summary
      cd12882
      Location:122 → 249
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
      cl17238
      Location:1352 → 1370
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    4. XM_016149943.2 → XP_016005429.2  E3 ubiquitin-protein ligase RNF123 isoform X5

      UniProtKB/TrEMBL
      A0A7J8HUB6, A0A7J8HV96
      Conserved Domains (2) summary
      cd12882
      Location:122 → 249
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
      cd16541
      Location:1249 → 1289
      RING-HC_RNF123; RING finger, HC subclass, found in RING finger protein 123 (RNF123) and similar proteins

    5. XM_036219769.1 → XP_036075662.1  E3 ubiquitin-protein ligase RNF123 isoform X4

      UniProtKB/TrEMBL
      A0A7J8HV96
      Conserved Domains (2) summary
      cd12882
      Location:122 → 249
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
      cl17238
      Location:1352 → 1370
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    6. XM_036219772.1 → XP_036075665.1  E3 ubiquitin-protein ligase RNF123 isoform X6

      UniProtKB/TrEMBL
      A0A7J8HV96
      Conserved Domains (2) summary
      cl02614
      Location:1 → 104
      SPRY; SPRY domain
      cl17238
      Location:1207 → 1225
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    7. XM_036219766.1 → XP_036075659.1  E3 ubiquitin-protein ligase RNF123 isoform X1

      UniProtKB/TrEMBL
      A0A7J8HV96
      Conserved Domains (2) summary
      cd12882
      Location:237 → 364
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
      cl17238
      Location:1467 → 1485
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    8. XM_036219767.1 → XP_036075660.1  E3 ubiquitin-protein ligase RNF123 isoform X2

      UniProtKB/TrEMBL
      A0A7J8HV96
      Conserved Domains (1) summary
      cd12882
      Location:237 → 364
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123

    9. XM_016149948.2 → XP_016005434.2  E3 ubiquitin-protein ligase RNF123 isoform X3

      UniProtKB/TrEMBL
      A0A7J8HV96
      Conserved Domains (2) summary
      cd12882
      Location:237 → 364
      SPRY_RNF123; SPRY domain at N-terminus of ring finger protein 123
      cd16541
      Location:1364 → 1404
      RING-HC_RNF123; RING finger, HC subclass, found in RING finger protein 123 (RNF123) and similar proteins

    RNA

    1. XR_004950578.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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