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    polr2a RNA polymerase II subunit A [ Fundulus heteroclitus (mummichog) ]

    Gene ID: 105934649, updated on 20-Aug-2024

    Summary

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    Gene symbol
    polr2a
    Gene description
    RNA polymerase II subunit A
    See related
    EnsemblRapid:ENSFHEG00000001768
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Fundulus heteroclitus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Fundulidae; Fundulus
    Orthologs
    human zebrafish all
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    Genomic context

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    See polr2a in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    102 current MU-UCD_Fhet_4.1 (GCF_011125445.2) 14 NC_046374.1 (17171095..17188243)
    101 previous assembly Fundulus_heteroclitus-3.0.2 (GCF_000826765.1) Unplaced Scaffold NW_012234406.1 (825003..842850, complement)

    Chromosome 14 - NC_046374.1Genomic Context describing neighboring genes Neighboring gene sex hormone-binding globulin Neighboring gene zinc finger and BTB domain containing 4 Neighboring gene capping protein (actin filament), gelsolin-like b Neighboring gene E3 ubiquitin-protein ligase TRIM39

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RNA polymerase II, core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-directed RNA polymerase II subunit RPB1
    Names
    polymerase (RNA) II (DNA directed) polypeptide A, 220kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Fundulus heteroclitus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MU-UCD_Fhet_4.1 Primary Assembly

    Genomic

    1. NC_046374.1 Reference MU-UCD_Fhet_4.1 Primary Assembly

      Range
      17171095..17188243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012874740.3 → XP_012730194.3  DNA-directed RNA polymerase II subunit RPB1

      UniProtKB/TrEMBL
      A0A3Q2Q6H7
      Related
      ENSFHEP00000063706.1, ENSFHET00000048438.1
      Conserved Domains (5) summary
      cd02584
      Location:1056 → 1474
      RNAP_II_Rpb1_C; Largest subunit (Rpb1) of Eukaryotic RNA polymerase II (RNAP II), C-terminal domain
      smart01104
      Location:1513 → 1612
      CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
      cd02733
      Location:17 → 874
      RNAP_II_RPB1_N; Largest subunit (Rpb1) of eukaryotic RNA polymerase II (RNAP II), N-terminal domain
      pfam05109
      Location:1854 → 1954
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam04992
      Location:894 → 1077
      RNA_pol_Rpb1_6; RNA polymerase Rpb1, domain 6
    Nucleotide Protein
    Heading Accession and Version

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