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    LARP7 La ribonucleoprotein 7, transcriptional regulator [ Egretta garzetta (little egret) ]

    Gene ID: 104135717, updated on 3-Aug-2024

    Summary

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    Gene symbol
    LARP7
    Gene description
    La ribonucleoprotein 7, transcriptional regulator
    Locus tag
    Z169_13795
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Egretta garzetta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
    Orthologs
    human mouse all
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    Genomic context

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    See LARP7 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009258780.1 (159553..189019)

    NW_009258780.1Genomic Context describing neighboring genes Neighboring gene alpha kinase 1 Neighboring gene zinc finger GRF-type containing 1 Neighboring gene uncharacterized LOC118451730 Neighboring gene ankyrin 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_009258780 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    la-related protein 7
    Names
    La ribonucleoprotein domain family member 7
    La-related protein 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM68718v1 Primary Assembly

    Genomic

    1. NW_009258780.1 Reference ASM68718v1 Primary Assembly

      Range
      159553..189019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035889089.1 → XP_035744982.1  la-related protein 7 isoform X5

      UniProtKB/TrEMBL
      A0A091IVZ4
      Conserved Domains (3) summary
      cd08032
      Location:70 → 151
      LARP_7; La RNA-binding domain of La-related protein 7
      cd12290
      Location:166 → 245
      RRM1_LARP7; RNA recognition motif 1 (RRM1) found in La-related protein 7 (LARP7) and similar proteins
      cd12542
      Location:503 → 576
      RRM2_LARP7; RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins

    2. XM_035889084.1 → XP_035744977.1  la-related protein 7 isoform X1

      UniProtKB/TrEMBL
      A0A091IVZ4
      Conserved Domains (3) summary
      cd08032
      Location:70 → 151
      LARP_7; La RNA-binding domain of La-related protein 7
      cd12290
      Location:166 → 245
      RRM1_LARP7; RNA recognition motif 1 (RRM1) found in La-related protein 7 (LARP7) and similar proteins
      cd12542
      Location:503 → 584
      RRM2_LARP7; RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins

    3. XM_035889085.1 → XP_035744978.1  la-related protein 7 isoform X2

      UniProtKB/TrEMBL
      A0A091IVZ4
      Conserved Domains (3) summary
      cd08032
      Location:70 → 151
      LARP_7; La RNA-binding domain of La-related protein 7
      cd12290
      Location:166 → 245
      RRM1_LARP7; RNA recognition motif 1 (RRM1) found in La-related protein 7 (LARP7) and similar proteins
      cd12542
      Location:484 → 565
      RRM2_LARP7; RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins

    4. XM_009649396.2 → XP_009647691.2  la-related protein 7 isoform X1

      UniProtKB/TrEMBL
      A0A091IVZ4
      Conserved Domains (3) summary
      cd08032
      Location:70 → 151
      LARP_7; La RNA-binding domain of La-related protein 7
      cd12290
      Location:166 → 245
      RRM1_LARP7; RNA recognition motif 1 (RRM1) found in La-related protein 7 (LARP7) and similar proteins
      cd12542
      Location:503 → 584
      RRM2_LARP7; RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins

    5. XM_035889088.1 → XP_035744981.1  la-related protein 7 isoform X4

      UniProtKB/TrEMBL
      A0A091IVZ4
      Conserved Domains (3) summary
      cd08032
      Location:70 → 151
      LARP_7; La RNA-binding domain of La-related protein 7
      cd12290
      Location:166 → 245
      RRM1_LARP7; RNA recognition motif 1 (RRM1) found in La-related protein 7 (LARP7) and similar proteins
      cd12542
      Location:503 → 575
      RRM2_LARP7; RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins

    6. XM_035889087.1 → XP_035744980.1  la-related protein 7 isoform X3

      UniProtKB/TrEMBL
      A0A091IVZ4
      Conserved Domains (3) summary
      cd08032
      Location:32 → 113
      LARP_7; La RNA-binding domain of La-related protein 7
      cd12290
      Location:128 → 207
      RRM1_LARP7; RNA recognition motif 1 (RRM1) found in La-related protein 7 (LARP7) and similar proteins
      cd12542
      Location:465 → 546
      RRM2_LARP7; RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins

    7. XM_035889086.1 → XP_035744979.1  la-related protein 7 isoform X3

      UniProtKB/TrEMBL
      A0A091IVZ4
      Conserved Domains (3) summary
      cd08032
      Location:32 → 113
      LARP_7; La RNA-binding domain of La-related protein 7
      cd12290
      Location:128 → 207
      RRM1_LARP7; RNA recognition motif 1 (RRM1) found in La-related protein 7 (LARP7) and similar proteins
      cd12542
      Location:465 → 546
      RRM2_LARP7; RNA recognition motif 2 in La-related protein 7 (LARP7) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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