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    LOC118430308 polyhomeotic-like protein 2 [ Branchiostoma floridae (Florida lancelet) ]

    Gene ID: 118430308, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC118430308
    Gene description
    polyhomeotic-like protein 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Branchiostoma floridae
    Lineage
    Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes; Branchiostomatidae; Branchiostoma
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    Genomic context

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    See LOC118430308 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    100 current Bfl_VNyyK (GCF_000003815.2) 14 NC_049992.1 (12086739..12109288, complement)

    Chromosome 14 - NC_049992.1Genomic Context describing neighboring genes Neighboring gene protein suppressor of hairy wing-like Neighboring gene myosin-11-like Neighboring gene uncharacterized protein C3orf14-like Neighboring gene 39S ribosomal protein L47, mitochondrial-like Neighboring gene peroxisomal targeting signal 1 receptor-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_049992.1 Chromosome 14 Reference Bfl_VNyyK Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Conserved Noncoding Elements in the Most Distant Genera of Cephalochordates: The Goldilocks Principle. Yue JX, et al. Genome Biol Evol, 2016 Aug 25. PMID 27412606, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PRC1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyhomeotic-like protein 2; polyhomeotic-like protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Branchiostoma floridae Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Bfl_VNyyK Primary Assembly

    Genomic

    1. NC_049992.1 Reference Bfl_VNyyK Primary Assembly

      Range
      12086739..12109288 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035841064.1 → XP_035696957.1  polyhomeotic-like protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A9J7M9A2, C3XYN9
      Conserved Domains (2) summary
      cd09577
      Location:968 → 1036
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:239 → 724
      PHA03247; large tegument protein UL36; Provisional

    2. XM_035841075.1 → XP_035696968.1  polyhomeotic-like protein 2 isoform X14

      UniProtKB/TrEMBL
      A0A9J7M9X5, C3XYN9
      Conserved Domains (3) summary
      cd09577
      Location:778 → 846
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:244 → 557
      PHA03247; large tegument protein UL36; Provisional
      PRK14971
      Location:429 → 556
      PRK14971; DNA polymerase III subunit gamma/tau

    3. XM_035841070.1 → XP_035696963.1  polyhomeotic-like protein 2 isoform X10

      UniProtKB/TrEMBL
      A0A9J7M9P3, C3XYN9
      Conserved Domains (2) summary
      cd09577
      Location:842 → 910
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:254 → 621
      PHA03247; large tegument protein UL36; Provisional

    4. XM_035841068.1 → XP_035696961.1  polyhomeotic-like protein 3 isoform X8

      UniProtKB/TrEMBL
      A0A9J7NBW6, C3XYN9
      Conserved Domains (2) summary
      cd09577
      Location:904 → 972
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:252 → 683
      PHA03247; large tegument protein UL36; Provisional

    5. XM_035841066.1 → XP_035696959.1  polyhomeotic-like protein 3 isoform X6

      UniProtKB/TrEMBL
      A0A9J7MBG8, C3XYN9
      Conserved Domains (2) summary
      cd09577
      Location:921 → 989
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:252 → 700
      PHA03247; large tegument protein UL36; Provisional

    6. XM_035841065.1 → XP_035696958.1  polyhomeotic-like protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A9J7M976, C3XYN9
      Conserved Domains (2) summary
      cd09577
      Location:964 → 1032
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:313 → 743
      PHA03247; large tegument protein UL36; Provisional

    7. XM_035841072.1 → XP_035696965.1  polyhomeotic-like protein 2 isoform X12

      UniProtKB/TrEMBL
      A0A9J7NBL0, C3XYN9
      Conserved Domains (3) summary
      cd09577
      Location:808 → 876
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:252 → 607
      PHA03247; large tegument protein UL36; Provisional
      PRK14971
      Location:447 → 586
      PRK14971; DNA polymerase III subunit gamma/tau

    8. XM_035841067.1 → XP_035696960.1  polyhomeotic-like protein 3 isoform X7

      UniProtKB/TrEMBL
      A0A9J7M9T9, C3XYN9
      Conserved Domains (2) summary
      cd09577
      Location:917 → 985
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:252 → 696
      PHA03247; large tegument protein UL36; Provisional

    9. XM_035841069.1 → XP_035696962.1  polyhomeotic-like protein 2 isoform X9

      UniProtKB/TrEMBL
      A0A9J7N8B9, C3XYN9
      Conserved Domains (2) summary
      cd09577
      Location:872 → 940
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:252 → 660
      PHA03247; large tegument protein UL36; Provisional

    10. XM_035841062.1 → XP_035696955.1  polyhomeotic-like protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A9J7MD20, C3XYN9
      Conserved Domains (2) summary
      cd09577
      Location:980 → 1048
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:390 → 760
      PHA03247; large tegument protein UL36; Provisional

    11. XM_035841063.1 → XP_035696956.1  polyhomeotic-like protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A9J7M9T1, C3XYN9
      Conserved Domains (2) summary
      cd09577
      Location:973 → 1041
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:252 → 737
      PHA03247; large tegument protein UL36; Provisional

    12. XM_035841061.1 → XP_035696954.1  polyhomeotic-like protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A9J7MAA4, C3XYN9
      Conserved Domains (2) summary
      cd09577
      Location:981 → 1049
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:252 → 737
      PHA03247; large tegument protein UL36; Provisional

    13. XM_035841073.1 → XP_035696966.1  polyhomeotic-like protein 3 isoform X13

      UniProtKB/TrEMBL
      A0A9J7NAA8
      Conserved Domains (2) summary
      cd09577
      Location:792 → 860
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:63 → 548
      PHA03247; large tegument protein UL36; Provisional

    14. XM_035841071.1 → XP_035696964.1  polyhomeotic-like protein 3 isoform X11

      UniProtKB/TrEMBL
      A0A9J7NAN7
      Conserved Domains (2) summary
      cd09577
      Location:811 → 879
      SAM_Ph1,2,3; SAM domain of Ph (polyhomeotic) proteins of Polycomb group
      PHA03247
      Location:82 → 567
      PHA03247; large tegument protein UL36; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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