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    LOC108980189 DNA (cytosine-5)-methyltransferase CMT2-like [ Juglans regia (English walnut) ]

    Gene ID: 108980189, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC108980189
    Gene description
    DNA (cytosine-5)-methyltransferase CMT2-like
    Locus tag
    F2P56_004473
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Juglans regia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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    Genomic context

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    See LOC108980189 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    101 current Walnut 2.0 (GCF_001411555.2) 2 NC_049902.1 (26825111..26872874)
    100 previous assembly wgs.5d (GCF_001411555.1) Unplaced Scaffold NW_017439658.1 (10813..56080, complement)

    Chromosome 2 - NC_049902.1Genomic Context describing neighboring genes Neighboring gene 4-coumarate--CoA ligase-like 6 Neighboring gene CSC1-like protein At1g32090 Neighboring gene uncharacterized LOC108980192 Neighboring gene isoflavone reductase homolog Neighboring gene scopoletin glucosyltransferase-like Neighboring gene scopoletin glucosyltransferase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA (cytosine-5)-methyltransferase CMT2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Juglans regia Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Walnut 2.0 Primary Assembly

    Genomic

    1. NC_049902.1 Reference Walnut 2.0 Primary Assembly

      Range
      26825111..26872874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018951041.2 → XP_018806586.1  DNA (cytosine-5)-methyltransferase CMT2-like isoform X1

      UniProtKB/TrEMBL
      A0A2I4DHF4, A0A833XUU1, A0A833Y7X0
      Conserved Domains (3) summary
      cd18635
      Location:760 → 816
      CD_CMT3_like; chromodomain of chromomethylase 3, and similar proteins
      cl30459
      Location:827 → 1185
      Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...
      cl02608
      Location:500 → 616
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    2. XM_035686294.1 → XP_035542187.1  DNA (cytosine-5)-methyltransferase CMT2-like isoform X3

      UniProtKB/TrEMBL
      A0A6P9EH73, A0A833Y7X0
      Conserved Domains (3) summary
      cd18635
      Location:742 → 798
      CD_CMT3_like; chromodomain of chromomethylase 3, and similar proteins
      cl30459
      Location:809 → 1167
      Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...
      cl02608
      Location:482 → 598
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    3. XM_035686293.1 → XP_035542186.1  DNA (cytosine-5)-methyltransferase CMT2-like isoform X2

      UniProtKB/TrEMBL
      A0A6P9E470, A0A833Y7X0
      Conserved Domains (3) summary
      cd18635
      Location:760 → 816
      CD_CMT3_like; chromodomain of chromomethylase 3, and similar proteins
      cl30459
      Location:827 → 1185
      Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...
      cl02608
      Location:500 → 616
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    4. XM_018951042.2 → XP_018806587.1  DNA (cytosine-5)-methyltransferase CMT2-like isoform X4

      UniProtKB/TrEMBL
      A0A2I4DHG5, A0A833Y418, A0A834D1M6
      Conserved Domains (3) summary
      cd18635
      Location:760 → 816
      CD_CMT3_like; chromodomain of chromomethylase 3, and similar proteins
      cl30459
      Location:827 → 973
      Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...
      cl02608
      Location:500 → 616
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    5. XM_018951043.2 → XP_018806588.1  DNA (cytosine-5)-methyltransferase CMT2-like isoform X5

      UniProtKB/TrEMBL
      A0A2I4DHG8, A0A833Y722, A0A834D1M6
      Conserved Domains (3) summary
      cd18635
      Location:760 → 816
      CD_CMT3_like; chromodomain of chromomethylase 3, and similar proteins
      cl30459
      Location:827 → 973
      Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...
      cl02608
      Location:500 → 616
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    6. XM_018951044.2 → XP_018806589.1  DNA (cytosine-5)-methyltransferase CMT2-like isoform X6

      UniProtKB/TrEMBL
      A0A2I4DHG9, A0A834D1M6, A0A834D5R5
      Conserved Domains (3) summary
      cd18635
      Location:760 → 816
      CD_CMT3_like; chromodomain of chromomethylase 3, and similar proteins
      cl30459
      Location:827 → 1161
      Cyt_C5_DNA_methylase; Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group ...
      cl02608
      Location:500 → 616
      BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

    RNA

    1. XR_004798535.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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