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    Cbr-ttr-10 Protein CBR-TTR-10 [ Caenorhabditis briggsae ]

    Gene ID: 8577427, updated on 6-Jun-2024

    Summary

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    Gene symbol
    Cbr-ttr-10
    Gene description
    Protein CBR-TTR-10
    Locus tag
    CBG_00829
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Caenorhabditis briggsae (strain: AF16)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Cbr-ttr-10 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_013488.2 (1581174..1581835, complement)

    Chromosome V - NC_013488.2Genomic Context describing neighboring genes Neighboring gene Protein CBG00828 Neighboring gene tRNA Neighboring gene Protein CBG00830 Neighboring gene tRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013488.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Protein CBR-TTR-10
    XP_002635432.1
    • C. briggsae CBR-TTR-10 protein; contains similarity to Pfam domain PF01060 Transthyretin-like family contains similarity to Interpro domain IPR001534 (Transthyretin-like);
      Predicted

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013488.2 Reference assembly

      Range
      1581174..1581835 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002635386.1 → XP_002635432.1  Protein CBR-TTR-10 [Caenorhabditis briggsae]

      See identical proteins and their annotated locations for XP_002635432.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAE9CXH9, A0AAE9EZY1, A8WNX9
      Conserved Domains (1) summary
      pfam01060
      Location:28 → 110
      TTR-52; Transthyretin-like family
    Nucleotide Protein
    Heading Accession and Version

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