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    Cbr-sti-1 Protein CBR-STI-1 [ Caenorhabditis briggsae ]

    Gene ID: 8576439, updated on 6-Jun-2024

    Summary

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    Gene symbol
    Cbr-sti-1
    Gene description
    Protein CBR-STI-1
    Locus tag
    CBG_04457
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Caenorhabditis briggsae (strain: AF16)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See Cbr-sti-1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    6
    Sequence:
    Chromosome: IV; NC_013487.2 (12237671..12238880)

    Chromosome IV - NC_013487.2Genomic Context describing neighboring genes Neighboring gene Protein CBR-FKB-6 Neighboring gene Protein CBR-CLEC-264 Neighboring gene Protein CBG04456 Neighboring gene Protein CBG04458

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013487.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. Stein LD, et al. PLoS Biol, 2003 Nov. PMID 14624247, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Hsp90 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Protein CBR-STI-1
    XP_002634443.1
    • C. briggsae CBR-STI-1 protein; contains similarity to Pfam domains PF07719 (Tetratricopeptide repeat) (2), PF00515 (Tetratricopeptide repeat) (4)contains similarity to Interpro domains IPR006636 (Heat shock chaperonin-binding), IPR001440 (Tetratricopeptide TPR-1), IPR013105 (Tetratricopeptide TPR2), IPR019734 (Tetratricopeptide repeat);
      Predicted

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013487.2 Reference assembly

      Range
      12237671..12238880
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002634397.1 → XP_002634443.1  Protein CBR-STI-1 [Caenorhabditis briggsae]

      See identical proteins and their annotated locations for XP_002634443.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAE9D6N1, A8WXL9
      Conserved Domains (6) summary
      smart00727
      Location:269 → 308
      STI1; Heat shock chaperonin-binding motif
      smart00028
      Location:144 → 173
      TPR; Tetratricopeptide repeats
      sd00006
      Location:140 → 168
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:5 → 38
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:140 → 205
      TPR_11; TPR repeat
      pfam13424
      Location:39 → 108
      TPR_12; Tetratricopeptide repeat
    Nucleotide Protein
    Heading Accession and Version

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