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    Chd2 chromodomain helicase DNA binding protein 2 [ Cricetulus griseus (Chinese hamster) ]

    Gene ID: 100756099, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Chd2
    Gene description
    chromodomain helicase DNA binding protein 2
    See related
    Ensembl:ENSCGRG00015021790
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cricetulus griseus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
    Orthologs
    human mouse all
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    Genomic context

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    See Chd2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    44
    Annotation release Status Assembly Chr Location
    104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613588.1 (4191491..4331910, complement)
    104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (123735291..123876516)

    NW_003613588.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107979388 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene repulsive guidance molecule BMP co-receptor a Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene uncharacterized LOC113834919

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 2
    Names
    Chromodomain-helicase-DNA-binding protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CriGri_1.0 Primary Assembly

    Genomic

    1. NW_003613588.1 Reference CriGri_1.0 Primary Assembly

      Range
      4191491..4331910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007630258.4 → XP_007628448.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A061IF55, A0A9J7JDL8
      Conserved Domains (6) summary
      PLN03142
      Location:481 → 1034
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389 → 460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272 → 356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477 → 713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:1484 → 1566
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:1143 → 1231
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

    2. XM_035448611.1 → XP_035304502.1  chromodomain-helicase-DNA-binding protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A061IF55, A0A9J7GU02
      Conserved Domains (6) summary
      PLN03142
      Location:370 → 923
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:278 → 349
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:161 → 245
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:366 → 602
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:1373 → 1455
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:1032 → 1120
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

    3. XM_007630325.4 → XP_007628515.1  chromodomain-helicase-DNA-binding protein 2 isoform X2

      See identical proteins and their annotated locations for XP_007628515.1

      UniProtKB/TrEMBL
      A0A061II71, G3GSE1
      Conserved Domains (8) summary
      cd00024
      Location:282 → 344
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      cd00046
      Location:503 → 648
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:487 → 768
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:790 → 905
      Helicase_C; Helicase conserved C-terminal domain
      pfam00385
      Location:379 → 447
      Chromo; Chromo (CHRromatin Organization MOdifier) domain
      pfam08648
      Location:1660 → 1748
      DUF1777; Protein of unknown function (DUF1777)
      pfam13907
      Location:1471 → 1553
      DUF4208; Domain of unknown function (DUF4208)
      pfam17104
      Location:1042 → 1165
      DUF5102; Domain of unknown function (DUF5102)

    4. XM_035448541.1 → XP_035304432.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A061IF55, A0A9J7JDL8
      Conserved Domains (6) summary
      PLN03142
      Location:481 → 1034
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389 → 460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272 → 356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477 → 713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:1484 → 1566
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:1143 → 1231
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

    5. XM_035448593.1 → XP_035304484.1  chromodomain-helicase-DNA-binding protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A061IF55, A0A9J7K5F9
      Conserved Domains (6) summary
      PLN03142
      Location:445 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:353 → 424
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:236 → 320
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:441 → 677
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:1448 → 1530
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:1107 → 1195
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

    6. XM_007630380.4 → XP_007628570.1  chromodomain-helicase-DNA-binding protein 2 isoform X5

      UniProtKB/TrEMBL
      A0A9J7JJS4
      Conserved Domains (2) summary
      cd00024
      Location:295 → 357
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      pfam00385
      Location:392 → 460
      Chromo; Chromo (CHRromatin Organization MOdifier) domain

    Alternate CriGri-PICRH-1.0

    Genomic

    1. NC_048596.1 Alternate CriGri-PICRH-1.0

      Range
      123735291..123876516
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_027408143.2 → XP_027263944.1  chromodomain-helicase-DNA-binding protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A061II71, G3GSE1
      Related
      ENSCGRP00015049895.1, ENSCGRT00015066372.1

    2. XM_035442454.1 → XP_035298345.1  chromodomain-helicase-DNA-binding protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A061IF55, A0A9J7GU02
      Conserved Domains (6) summary
      PLN03142
      Location:370 → 923
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:278 → 349
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:161 → 245
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:366 → 602
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:1373 → 1455
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:1032 → 1120
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

    3. XM_027408142.2 → XP_027263943.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A061IF55, A0A9J7JDL8
      Conserved Domains (6) summary
      PLN03142
      Location:481 → 1034
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389 → 460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272 → 356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477 → 713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:1484 → 1566
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:1143 → 1231
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

    4. XM_035442453.1 → XP_035298344.1  chromodomain-helicase-DNA-binding protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A061IF55, A0A9J7K5F9
      Related
      ENSCGRP00015044484.1, ENSCGRT00015077347.1
      Conserved Domains (6) summary
      PLN03142
      Location:445 → 998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:353 → 424
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:236 → 320
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:441 → 677
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:1448 → 1530
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:1107 → 1195
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

    5. XM_035442451.1 → XP_035298342.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A061IF55, A0A9J7JDL8
      Related
      ENSCGRP00015045851.1, ENSCGRT00015056519.1
      Conserved Domains (6) summary
      PLN03142
      Location:481 → 1034
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389 → 460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272 → 356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477 → 713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:1484 → 1566
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:1143 → 1231
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1

    6. XM_027408146.2 → XP_027263947.1  chromodomain-helicase-DNA-binding protein 2 isoform X5

      UniProtKB/TrEMBL
      A0A9J7JJS4
    Nucleotide Protein Strain
    Heading Accession and Version

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