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    HBP1 HMG-box transcription factor 1 [ Zootoca vivipara (common lizard) ]

    Gene ID: 118091189, updated on 20-Mar-2024

    Summary

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    Gene symbol
    HBP1
    Gene description
    HMG-box transcription factor 1
    See related
    EnsemblRapid:ENSZVIG00000021564
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zootoca vivipara
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca
    Orthologs
    human mouse all
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    Genomic context

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    See HBP1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_10 current rZooViv1.1 (GCF_963506605.1) 10 NC_083285.1 (7477239..7500840)
    100 previous assembly UG_Zviv_1 (GCF_011800845.1) Linkage Group LG9 NC_048613.1 (4241198..4262814, complement)

    Chromosome 10 - NC_083285.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta Neighboring gene component of oligomeric golgi complex 5 Neighboring gene G protein-coupled receptor 22 Neighboring gene solute carrier family 26 member 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    HMG box-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_963506605.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rZooViv1.1

    Genomic

    1. NC_083285.1 Reference rZooViv1.1

      Range
      7477239..7500840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035127865.2 → XP_034983756.1  HMG box-containing protein 1 isoform X2

      Conserved Domains (2) summary
      cd01388
      Location:437 → 508
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam08517
      Location:214 → 338
      AXH; Ataxin-1 and HBP1 module (AXH)

    2. XM_035127864.2 → XP_034983755.1  HMG box-containing protein 1 isoform X1

      Related
      ENSZVIP00000029948.1
      Conserved Domains (2) summary
      cd01388
      Location:450 → 521
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam08517
      Location:227 → 351
      AXH; Ataxin-1 and HBP1 module (AXH)
    Nucleotide Protein
    Heading Accession and Version

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