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    CCNK cyclin K [ Zootoca vivipara (common lizard) ]

    Gene ID: 118080694, updated on 20-Mar-2024

    Summary

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    Gene symbol
    CCNK
    Gene description
    cyclin K
    See related
    EnsemblRapid:ENSZVIG00000000526
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zootoca vivipara
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca
    Orthologs
    human mouse all
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    Genomic context

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    See CCNK in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_10 current rZooViv1.1 (GCF_963506605.1) 1 NC_083276.1 (16904633..16918238, complement)
    100 previous assembly UG_Zviv_1 (GCF_011800845.1) Linkage Group LG1 NC_048605.1 (16471422..16485815, complement)

    Chromosome 1 - NC_083276.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 85C Neighboring gene uncharacterized LOC132591755 Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene SET domain containing 3, actin N3(tau)-histidine methyltransferase Neighboring gene BCL11 transcription factor B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription, elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cyclin/CDK positive transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-K

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_963506605.1-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rZooViv1.1

    Genomic

    1. NC_083276.1 Reference rZooViv1.1

      Range
      16904633..16918238 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035106316.2 → XP_034962207.1  cyclin-K isoform X1

      Conserved Domains (2) summary
      cd20530
      Location:40 → 177
      CYCLIN_CCNK_rpt1; first cyclin box found in cyclin-K (CCNK) and similar proteins
      cd20531
      Location:181 → 281
      CYCLIN_CCNK_rpt2; second cyclin box found in cyclin-K (CCNK) and similar proteins

    2. XM_035106352.2 → XP_034962243.1  cyclin-K isoform X2

      Related
      ENSZVIP00000000709.1
      Conserved Domains (2) summary
      cd20530
      Location:40 → 154
      CYCLIN_CCNK_rpt1; first cyclin box found in cyclin-K (CCNK) and similar proteins
      cd20531
      Location:158 → 258
      CYCLIN_CCNK_rpt2; second cyclin box found in cyclin-K (CCNK) and similar proteins

    3. XM_035106307.2 → XP_034962198.1  cyclin-K isoform X1

      Related
      ENSZVIP00000000701.1
      Conserved Domains (2) summary
      cd20530
      Location:40 → 177
      CYCLIN_CCNK_rpt1; first cyclin box found in cyclin-K (CCNK) and similar proteins
      cd20531
      Location:181 → 281
      CYCLIN_CCNK_rpt2; second cyclin box found in cyclin-K (CCNK) and similar proteins

    4. XM_035106325.1 → XP_034962216.1  cyclin-K isoform X1

      Conserved Domains (2) summary
      cd20530
      Location:40 → 177
      CYCLIN_CCNK_rpt1; first cyclin box found in cyclin-K (CCNK) and similar proteins
      cd20531
      Location:181 → 281
      CYCLIN_CCNK_rpt2; second cyclin box found in cyclin-K (CCNK) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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