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    LOC117933045 probable glutathione S-transferase [ Vitis riparia (riverbank grape) ]

    Gene ID: 117933045, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC117933045
    Gene description
    probable glutathione S-transferase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis riparia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC117933045 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current EGFV_Vit.rip_1.0 (GCF_004353265.1) 16 NC_048446.1 (516471..518811, complement)

    Chromosome 16 - NC_048446.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 89A2-like Neighboring gene uncharacterized LOC117933454 Neighboring gene cytochrome P450 89A2-like Neighboring gene SWI/SNF chromatin-remodeling complex subunit SNF5 Neighboring gene probable glucan 1,3-alpha-glucosidase Neighboring gene cell division cycle 20.2, cofactor of APC complex-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048446.1 Chromosome 16 Reference EGFV_Vit.rip_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutathione transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutathione metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable glutathione S-transferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vitis riparia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EGFV_Vit.rip_1.0 Primary Assembly

    Genomic

    1. NC_048446.1 Reference EGFV_Vit.rip_1.0 Primary Assembly

      Range
      516471..518811 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034854397.1 → XP_034710288.1  probable glutathione S-transferase

      Conserved Domains (2) summary
      cd03185
      Location:94 → 223
      GST_C_Tau; C-terminal, alpha helical domain of Class Tau Glutathione S-transferases
      cd03058
      Location:11 → 84
      GST_N_Tau; GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, ...
    Nucleotide Protein
    Heading Accession and Version

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