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    LOC117929602 alpha-mannosidase 2 [ Vitis riparia (riverbank grape) ]

    Gene ID: 117929602, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC117929602
    Gene description
    alpha-mannosidase 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis riparia
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC117929602 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current EGFV_Vit.rip_1.0 (GCF_004353265.1) 14 NC_048444.1 (1723138..1729927, complement)

    Chromosome 14 - NC_048444.1Genomic Context describing neighboring genes Neighboring gene betaine aldehyde dehydrogenase 1, chloroplastic-like Neighboring gene mannose-1-phosphate guanyltransferase alpha-like Neighboring gene protein transport protein SEC13 homolog B Neighboring gene E2F transcription factor-like E2FF

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048444.1 Chromosome 14 Reference EGFV_Vit.rip_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-mannosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in N-glycan processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mannose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deglycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-mannosidase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Vitis riparia Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EGFV_Vit.rip_1.0 Primary Assembly

    Genomic

    1. NC_048444.1 Reference EGFV_Vit.rip_1.0 Primary Assembly

      Range
      1723138..1729927 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034849937.1 → XP_034705828.1  alpha-mannosidase 2

      Conserved Domains (1) summary
      PLN02701
      Location:99 → 1148
      PLN02701; alpha-mannosidase

    2. XM_034849935.1 → XP_034705826.1  alpha-mannosidase 2

      Conserved Domains (1) summary
      PLN02701
      Location:99 → 1148
      PLN02701; alpha-mannosidase

    3. XM_034849934.1 → XP_034705825.1  alpha-mannosidase 2

      Conserved Domains (1) summary
      PLN02701
      Location:99 → 1148
      PLN02701; alpha-mannosidase
    Nucleotide Protein
    Heading Accession and Version

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