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    NGFR nerve growth factor receptor [ Trachemys scripta elegans ]

    Gene ID: 117869333, updated on 19-Mar-2024

    Summary

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    Gene symbol
    NGFR
    Gene description
    nerve growth factor receptor
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trachemys scripta elegans (sub-species: elegans)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Emydidae; Trachemys
    Orthologs
    human mouse all
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    Genomic context

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    See NGFR in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current CAS_Tse_1.0 (GCF_013100865.1) 23 NC_048320.1 (9900187..9938823, complement)

    Chromosome 23 - NC_048320.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117869434 Neighboring gene uncharacterized LOC117869290 Neighboring gene prohibitin 1 Neighboring gene zinc finger protein 652

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_048320.1 Chromosome 23 Reference CAS_Tse_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta). Kaplinsky NJ, et al. PLoS One, 2013. PMID 23840449, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables coreceptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables death receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nerve growth factor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Rho protein signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tumor necrosis factor receptor superfamily member 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Trachemys scripta elegans Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAS_Tse_1.0 Primary Assembly

    Genomic

    1. NC_048320.1 Reference CAS_Tse_1.0 Primary Assembly

      Range
      9900187..9938823 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034756099.1 → XP_034611990.1  tumor necrosis factor receptor superfamily member 16

    Nucleotide Protein
    Heading Accession and Version

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