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    LOC117625035 heterogeneous nuclear ribonucleoprotein 1-like [ Prunus dulcis (almond) ]

    Gene ID: 117625035, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC117625035
    Gene description
    heterogeneous nuclear ribonucleoprotein 1-like
    Locus tag
    ALMOND_2B016751
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Prunus dulcis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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    Genomic context

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    See LOC117625035 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current ALMONDv2 (GCF_902201215.1) 4 NC_047653.1 (15433679..15437355, complement)

    Chromosome 4 - NC_047653.1Genomic Context describing neighboring genes Neighboring gene probable inactive receptor kinase At5g53320 Neighboring gene probable serine/threonine-protein kinase WNK11 Neighboring gene probable inactive receptor kinase At5g53320 Neighboring gene probable serine/threonine-protein kinase WNK11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047653.1 Chromosome 4 Reference ALMONDv2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein 1-like
    Names
    PREDICTED: heterogeneous nuclear

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Prunus dulcis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ALMONDv2 Primary Assembly

    Genomic

    1. NC_047653.1 Reference ALMONDv2 Primary Assembly

      Range
      15433679..15437355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034356597.1 → XP_034212488.1  heterogeneous nuclear ribonucleoprotein 1-like isoform X1

      UniProtKB/TrEMBL
      A0A5E4GFG8
      Conserved Domains (4) summary
      COG0724
      Location:86 → 294
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12325
      Location:11 → 81
      RRM1_hnRNPA_hnRNPD_like; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP A and hnRNP D subfamilies and similar proteins
      cd12330
      Location:109 → 186
      RRM2_Hrp1p; RNA recognition motif 2 (RRM2) found in yeast nuclear polyadenylated RNA-binding protein 4 (Hrp1p or Nab4p) and similar proteins
      NF033849
      Location:249 → 447
      ser_rich_anae_1; serine-rich protein

    2. XM_034356599.1 → XP_034212490.1  heterogeneous nuclear ribonucleoprotein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A5E4GF96, A0A5E4GFG8
      Conserved Domains (4) summary
      COG0724
      Location:83 → 291
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12325
      Location:8 → 78
      RRM1_hnRNPA_hnRNPD_like; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP A and hnRNP D subfamilies and similar proteins
      cd12330
      Location:106 → 183
      RRM2_Hrp1p; RNA recognition motif 2 (RRM2) found in yeast nuclear polyadenylated RNA-binding protein 4 (Hrp1p or Nab4p) and similar proteins
      NF033849
      Location:246 → 444
      ser_rich_anae_1; serine-rich protein

    3. XM_034356598.1 → XP_034212489.1  heterogeneous nuclear ribonucleoprotein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A5E4GF96, A0A5E4GFG8
      Conserved Domains (4) summary
      COG0724
      Location:83 → 291
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12325
      Location:8 → 78
      RRM1_hnRNPA_hnRNPD_like; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP A and hnRNP D subfamilies and similar proteins
      cd12330
      Location:106 → 183
      RRM2_Hrp1p; RNA recognition motif 2 (RRM2) found in yeast nuclear polyadenylated RNA-binding protein 4 (Hrp1p or Nab4p) and similar proteins
      NF033849
      Location:246 → 444
      ser_rich_anae_1; serine-rich protein

    4. XM_034356600.1 → XP_034212491.1  heterogeneous nuclear ribonucleoprotein 1-like isoform X2

      UniProtKB/TrEMBL
      A0A5E4GF96, A0A5E4GFG8
      Conserved Domains (4) summary
      COG0724
      Location:83 → 291
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12325
      Location:8 → 78
      RRM1_hnRNPA_hnRNPD_like; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein hnRNP A and hnRNP D subfamilies and similar proteins
      cd12330
      Location:106 → 183
      RRM2_Hrp1p; RNA recognition motif 2 (RRM2) found in yeast nuclear polyadenylated RNA-binding protein 4 (Hrp1p or Nab4p) and similar proteins
      NF033849
      Location:246 → 444
      ser_rich_anae_1; serine-rich protein
    Nucleotide Protein
    Heading Accession and Version

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