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    IDH-V isocitrate dehydrogenase V [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831884, updated on 18-Sep-2024

    Summary

    Official Symbol
    IDH-V
    Official Full Name
    isocitrate dehydrogenase V
    Primary source
    TAIR:AT5G03290
    Locus tag
    AT5G03290
    See related
    Araport:AT5G03290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12E4.20; F12E4_20; isocitrate dehydrogenase V
    Summary
    Encodes a catalytic subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.
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    Genomic context

    See IDH-V in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (793974..796218)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NRAMP metal ion transporter family protein Neighboring gene ncRNA Neighboring gene adenosine kinase 2 Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene ncRNA

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    General gene information

    NM_120407.6

    Gene Ontology Provided by TAIR

    General protein information

    Preferred Names
    isocitrate dehydrogenase V
    NP_568113.1
    • isocitrate dehydrogenase V (IDH-V); FUNCTIONS IN: isocitrate dehydrogenase (NAD+) activity, zinc ion binding, ATP binding; INVOLVED IN: isocitrate metabolic process, tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase VI (TAIR:AT3G09810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      793974..796218
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120407.6 → NP_568113.1  isocitrate dehydrogenase V [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568113.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q945K7, Q9LZG1
      UniProtKB/TrEMBL
      A0A178UB52, A0A5S9Y188
      Conserved Domains (1) summary
      PLN00118
      Location:3 → 374
      PLN00118; isocitrate dehydrogenase (NAD+)
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