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    Calcineurin-like metallo-phosphoesterase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820158, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Calcineurin-like metallo-phosphoesterase superfamily protein
    Primary source
    TAIR:AT3G09970
    Locus tag
    AT3G09970
    See related
    Araport:AT3G09970
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (3063736..3065577)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Calcineurin-like metallo-phosphoesterase superfamily protein Neighboring gene ankyrin repeat 30A-like protein (DUF662) Neighboring gene Nucleoside transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Structural basis for the preference of the Arabidopsis thaliana phosphatase RLPH2 for tyrosine-phosphorylated substrates. Labandera AM, et al. Sci Signal, 2018 Apr 3. PMID 29615518
    2. Rhizobiales-like Phosphatase 2 from Arabidopsis thaliana Is a Novel Phospho-tyrosine-specific Phospho-protein Phosphatase (PPP) Family Protein Phosphatase. Uhrig RG, et al. J Biol Chem, 2016 Mar 11. PMID 26742850, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Arabidopsis thaliana Rhizobiales-like phosphatase 2 (RLPH2) strongly prefers substrates bearing phosphorylated tyrosine residues.
      Title: Structural basis for the preference of the Arabidopsis thaliana phosphatase RLPH2 for tyrosine-phosphorylated substrates.
    2. Rhizobiales-like protein phosphatase 2 is localized to the plant cell cytosol and is particularly sensitive to inhibition by the adenylates, ATP and ADP.
      Title: Rhizobiales-like Phosphatase 2 from Arabidopsis thaliana Is a Novel Phospho-tyrosine-specific Phospho-protein Phosphatase (PPP) Family Protein Phosphatase.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_001337852.1
    NM_111832.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT enables protein serine/threonine phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein tyrosine phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    NOT involved_in peptidyl-serine dephosphorylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT involved_in peptidyl-threonine dephosphorylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within peptidyl-tyrosine dephosphorylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Calcineurin-like metallo-phosphoesterase superfamily protein
    NP_566364.1
    • Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT3G09960.1); Has 1009 Blast hits to 1009 proteins in 371 species: Archae - 12; Bacteria - 594; Metazoa - 24; Fungi - 11; Plants - 146; Viruses - 12; Other Eukaryotes - 210 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3063736..3065577
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111832.3 → NP_566364.1  Calcineurin-like metallo-phosphoesterase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566364.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178V7L4, Q8L8R0, Q8RXI9, Q9SR62
      UniProtKB/TrEMBL
      A0A384KNX5, A0A5S9XAR1
      Conserved Domains (1) summary
      cd07421
      Location:5 → 308
      MPP_Rhilphs; Rhilph phosphatases, metallophosphatase domain

    2. NM_001337852.1 → NP_001326144.1  Calcineurin-like metallo-phosphoesterase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LND6
      Conserved Domains (1) summary
      cl13995
      Location:5 → 253
      MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SR62.1

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