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    SBP (S-ribonuclease binding protein) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 840168, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SBP (S-ribonuclease binding protein) family protein
    Primary source
    TAIR:AT1G32740
    Locus tag
    AT1G32740
    See related
    Araport:AT1G32740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6N18.12; F6N18_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (11844660..11846347)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cytochrome C oxidase polypeptide VIB family protein Neighboring gene electron carrier/iron ion-binding protein Neighboring gene HAC13 protein (HAC13) Neighboring gene ncRNA Neighboring gene Glutaredoxin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333017.1
    NM_001333018.1
    NM_001333019.1
    NM_103008.4

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SBP (S-ribonuclease binding protein) family protein
    NP_564408.1
    • SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT4G17680.1); Has 798 Blast hits to 798 proteins in 121 species: Archae - 0; Bacteria - 4; Metazoa - 316; Fungi - 15; Plants - 388; Viruses - 21; Other Eukaryotes - 54 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      11844660..11846347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103008.4 → NP_564408.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564408.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EG31, Q8LCK5
      Conserved Domains (1) summary
      pfam13920
      Location:265 → 299
      zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)

    2. NM_001333017.1 → NP_001323257.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWK1, Q9LPJ0

    3. NM_001333018.1 → NP_001323258.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWK1, Q9LPJ0

    4. NM_001333019.1 → NP_001323256.1  SBP (S-ribonuclease binding protein) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AWG5, A0A654EG31
    Nucleotide Protein
    Heading Accession and Version

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