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    dpf1 double PHD fingers 1 [ Thalassophryne amazonica ]

    Gene ID: 117508217, updated on 19-Mar-2024

    Summary

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    Gene symbol
    dpf1
    Gene description
    double PHD fingers 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Thalassophryne amazonica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Batrachoidaria; Batrachoididae; Thalassophryne
    Orthologs
    human zebrafish all
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    Genomic context

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    See dpf1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    100 current fThaAma1.1 (GCF_902500255.1) 4 NC_047106.1 (51463263..51644636)

    Chromosome 4 - NC_047106.1Genomic Context describing neighboring genes Neighboring gene zinc finger FYVE domain-containing protein 1 Neighboring gene uncharacterized LOC117508216 Neighboring gene uncharacterized LOC117508218 Neighboring gene apolipoprotein A-I-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047106.1 Chromosome 4 Reference fThaAma1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein neuro-d4
    Names
    D4, zinc and double PHD fingers family 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Thalassophryne amazonica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fThaAma1.1

    Genomic

    1. NC_047106.1 Reference fThaAma1.1

      Range
      51463263..51644636
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034167881.1 → XP_034023772.1  zinc finger protein neuro-d4 isoform X2

      Conserved Domains (4) summary
      COG5189
      Location:220 → 248
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      cd15530
      Location:339 → 384
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15690
      Location:281 → 338
      PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
      pfam14051
      Location:41 → 107
      Requiem_N; N-terminal domain of DPF2/REQ

    2. XM_034167880.1 → XP_034023771.1  zinc finger protein neuro-d4 isoform X1

      Conserved Domains (5) summary
      COG5189
      Location:229 → 257
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:235 → 254
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd15530
      Location:348 → 393
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15690
      Location:290 → 347
      PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
      pfam14051
      Location:50 → 116
      Requiem_N; N-terminal domain of DPF2/REQ

    3. XM_034167882.1 → XP_034023773.1  zinc finger protein neuro-d4 isoform X3

      Conserved Domains (5) summary
      COG5189
      Location:229 → 257
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:235 → 254
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd15530
      Location:308 → 353
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      pfam14051
      Location:50 → 116
      Requiem_N; N-terminal domain of DPF2/REQ
      cl22851
      Location:282 → 307
      PHD_SF; PHD finger superfamily

    4. XM_034167883.1 → XP_034023774.1  zinc finger protein neuro-d4 isoform X4

      Conserved Domains (5) summary
      COG5189
      Location:156 → 184
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:162 → 181
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd15530
      Location:275 → 320
      PHD2_d4; PHD finger 2 found in d4 gene family proteins
      cd15690
      Location:217 → 274
      PHD1_DPF1; PHD finger 1 found in D4, zinc and double PHD fingers family 1 (DPF1)
      pfam14051
      Location:1 → 43
      Requiem_N; N-terminal domain of DPF2/REQ

    RNA

    1. XR_004560015.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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