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    Vacuolar calcium-binding protein-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837760, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Vacuolar calcium-binding protein-like protein
    Primary source
    TAIR:AT1G12080
    Locus tag
    AT1G12080
    See related
    Araport:AT1G12080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12F1.4; F12F1_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (4084162..4085185)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Immunoglobulin E-set superfamily protein Neighboring gene extensin-like protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_101080.2
    NM_179319.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_positive_effect cellular response to gibberellin stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect cellular response to sucrose starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to absence of light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_negative_effect response to calcium ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to glucose IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to mannitol IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_negative_effect response to metal ion IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_negative_effect response to molecule of bacterial origin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to salt IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_positive_effect response to sorbitol IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region HDA PubMed 

    General protein information

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    Preferred Names
    Vacuolar calcium-binding protein-like protein
    NP_563898.1
    • Vacuolar calcium-binding protein-related; Has 7161 Blast hits to 3135 proteins in 433 species: Archae - 55; Bacteria - 867; Metazoa - 2008; Fungi - 476; Plants - 327; Viruses - 233; Other Eukaryotes - 3195 (source: NCBI BLink).
    NP_849650.1
    • Vacuolar calcium-binding protein-related; BEST Arabidopsis thaliana protein match is: Vacuolar calcium-binding protein-related (TAIR:AT1G62480.1); Has 21609 Blast hits to 9169 proteins in 1089 species: Archae - 145; Bacteria - 3596; Metazoa - 6157; Fungi - 1827; Plants - 760; Viruses - 333; Other Eukaryotes - 8791 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4084162..4085185
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179319.5 → NP_849650.1  Vacuolar calcium-binding protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849650.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O65370, Q8LC93
      UniProtKB/TrEMBL
      A0A178WMP5

    2. NM_101080.2 → NP_563898.1  Vacuolar calcium-binding protein-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563898.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8LC93
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O65370.1

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