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    plecb plectin b [ Pseudochaenichthys georgianus (South Georgia icefish) ]

    Gene ID: 117461602, updated on 19-Mar-2024

    Summary

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    Gene symbol
    plecb
    Gene description
    plectin b
    See related
    EnsemblRapid:ENSPGEG00000007748
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pseudochaenichthys georgianus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Channichthyidae; Pseudochaenichthys
    Orthologs
    zebrafish all
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    Genomic context

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    See plecb in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    100 current fPseGeo1.1 (GCF_902827115.1) 16 NC_047518.1 (14294966..14456871, complement)

    Chromosome 16 - NC_047518.1Genomic Context describing neighboring genes Neighboring gene microtubule-actin cross-linking factor 1-like Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene hepcidin-like Neighboring gene hepcidin-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047518.1 Chromosome 16 Reference fPseGeo1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ankyrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of muscle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hemidesmosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intermediate filament cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in wound healing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in hemidesmosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intermediate filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plectin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pseudochaenichthys georgianus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fPseGeo1.1

    Genomic

    1. NC_047518.1 Reference fPseGeo1.1

      Range
      14294966..14456871 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_034103548.1 → XP_033959439.1  plectin isoform X6

      Related
      ENSPGEP00000027899.1, ENSPGET00000029139.1
      Conserved Domains (9) summary
      PTZ00121
      Location:1262 → 2021
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:3442 → 3476
      PLEC; Plectin repeat
      cd00176
      Location:646 → 835
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00681
      Location:4051 → 4090
      Plectin; Plectin repeat
      pfam17902
      Location:821 → 887
      SH3_10; SH3 domain
      pfam18373
      Location:922 → 999
      Spectrin_like; Spectrin like domain
      cd21188
      Location:67 → 171
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:184 → 289
      CH_SF; calponin homology (CH) domain superfamily
      cl02488
      Location:1146 → 1306
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    2. XM_034103547.1 → XP_033959438.1  plectin isoform X5

      Conserved Domains (12) summary
      PTZ00121
      Location:2344 → 3103
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:4524 → 4558
      PLEC; Plectin repeat
      cd00176
      Location:1728 → 1917
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00681
      Location:5133 → 5172
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 100
      S10_plectin; Plectin/S10 domain
      pfam17902
      Location:1903 → 1969
      SH3_10; SH3 domain
      pfam18373
      Location:2004 → 2081
      Spectrin_like; Spectrin like domain
      cd21188
      Location:1149 → 1253
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      NF033840
      Location:365 → 682
      PspC_relate_1; PspC-related protein choline-binding protein 1
      NF033913
      Location:848 → 1027
      fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA
      cl00030
      Location:1266 → 1371
      CH_SF; calponin homology (CH) domain superfamily
      cl02488
      Location:2228 → 2388
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    3. XM_034103546.1 → XP_033959437.1  plectin isoform X4

      Conserved Domains (12) summary
      PTZ00121
      Location:2355 → 3114
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:4535 → 4569
      PLEC; Plectin repeat
      cd00176
      Location:1731 → 1920
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00681
      Location:5144 → 5183
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 100
      S10_plectin; Plectin/S10 domain
      pfam17902
      Location:1906 → 1972
      SH3_10; SH3 domain
      pfam18373
      Location:2007 → 2084
      Spectrin_like; Spectrin like domain
      cd21188
      Location:1149 → 1256
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      NF033840
      Location:365 → 682
      PspC_relate_1; PspC-related protein choline-binding protein 1
      NF033913
      Location:848 → 1027
      fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA
      cl00030
      Location:1269 → 1374
      CH_SF; calponin homology (CH) domain superfamily
      cl02488
      Location:2239 → 2399
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    4. XM_034103545.1 → XP_033959436.1  plectin isoform X3

      Conserved Domains (12) summary
      PTZ00121
      Location:2357 → 3116
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:4537 → 4571
      PLEC; Plectin repeat
      cd00176
      Location:1733 → 1922
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00681
      Location:5146 → 5185
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 100
      S10_plectin; Plectin/S10 domain
      pfam17902
      Location:1908 → 1974
      SH3_10; SH3 domain
      pfam18373
      Location:2009 → 2086
      Spectrin_like; Spectrin like domain
      cd21188
      Location:1149 → 1258
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      NF033840
      Location:365 → 682
      PspC_relate_1; PspC-related protein choline-binding protein 1
      NF033913
      Location:848 → 1027
      fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA
      cl00030
      Location:1271 → 1376
      CH_SF; calponin homology (CH) domain superfamily
      cl02488
      Location:2241 → 2401
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    5. XM_034103544.1 → XP_033959435.1  plectin isoform X2

      Conserved Domains (12) summary
      PTZ00121
      Location:2361 → 3120
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:4541 → 4575
      PLEC; Plectin repeat
      cd00176
      Location:1745 → 1934
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00681
      Location:5150 → 5189
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 100
      S10_plectin; Plectin/S10 domain
      pfam17902
      Location:1920 → 1986
      SH3_10; SH3 domain
      pfam18373
      Location:2021 → 2098
      Spectrin_like; Spectrin like domain
      cd21188
      Location:1149 → 1270
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      NF033840
      Location:365 → 682
      PspC_relate_1; PspC-related protein choline-binding protein 1
      NF033913
      Location:848 → 1027
      fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA
      cl00030
      Location:1283 → 1388
      CH_SF; calponin homology (CH) domain superfamily
      cl02488
      Location:2245 → 2405
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    6. XM_034103543.1 → XP_033959434.1  plectin isoform X1

      Conserved Domains (12) summary
      PTZ00121
      Location:2369 → 3128
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:4549 → 4583
      PLEC; Plectin repeat
      cd00176
      Location:1745 → 1934
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00681
      Location:5158 → 5197
      Plectin; Plectin repeat
      pfam03501
      Location:7 → 100
      S10_plectin; Plectin/S10 domain
      pfam17902
      Location:1920 → 1986
      SH3_10; SH3 domain
      pfam18373
      Location:2021 → 2098
      Spectrin_like; Spectrin like domain
      cd21188
      Location:1149 → 1270
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      NF033840
      Location:365 → 682
      PspC_relate_1; PspC-related protein choline-binding protein 1
      NF033913
      Location:848 → 1027
      fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA
      cl00030
      Location:1283 → 1388
      CH_SF; calponin homology (CH) domain superfamily
      cl02488
      Location:2253 → 2413
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    7. XM_034103549.1 → XP_033959440.1  plectin isoform X7

      Related
      ENSPGEP00000028486.1, ENSPGET00000029764.1
      Conserved Domains (9) summary
      PTZ00121
      Location:1238 → 1997
      PTZ00121; MAEBL; Provisional
      smart00250
      Location:3418 → 3452
      PLEC; Plectin repeat
      cd00176
      Location:622 → 811
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      pfam00681
      Location:4027 → 4066
      Plectin; Plectin repeat
      pfam17902
      Location:797 → 863
      SH3_10; SH3 domain
      pfam18373
      Location:898 → 975
      Spectrin_like; Spectrin like domain
      cd21188
      Location:43 → 147
      CH_PLEC-like_rpt1; first calponin homology (CH) domain found in the plectin/dystonin/MACF1 family
      cl00030
      Location:160 → 265
      CH_SF; calponin homology (CH) domain superfamily
      cl02488
      Location:1122 → 1282
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
    Nucleotide Protein
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