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    plant/protein (DUF789) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838961, updated on 18-Sep-2024

    Summary

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    Official Full Name
    plant/protein (DUF789)
    Primary source
    TAIR:AT1G03610
    Locus tag
    AT1G03610
    See related
    Araport:AT1G03610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F21B7.22
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (900732..903070)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene photosystem II family protein Neighboring gene ELMO/CED-12 family protein Neighboring gene protochlorophyllide oxidoreductase C Neighboring gene tRNA-Phe

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100241.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    plant/protein (DUF789)
    NP_563688.1
    • Protein of unknown function (DUF789); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF789 (InterPro:IPR008507); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF789) (TAIR:AT4G03420.1); Has 266 Blast hits to 262 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 263; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      900732..903070
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331422.1 → NP_001322830.1  plant/protein (DUF789) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AV44
      Conserved Domains (1) summary
      pfam05623
      Location:11 → 238
      DUF789; Protein of unknown function (DUF789)

    2. NM_100241.4 → NP_563688.1  plant/protein (DUF789) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563688.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WD37, A0A5S9SF51, Q8LF98, Q8RY13
      Conserved Domains (1) summary
      pfam05623
      Location:11 → 299
      DUF789; Protein of unknown function (DUF789)
    Nucleotide Protein
    Heading Accession and Version

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