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    RIMBP2 RIMS binding protein 2 [ Geotrypetes seraphini ]

    Gene ID: 117365685, updated on 19-Mar-2024

    Summary

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    Gene symbol
    RIMBP2
    Gene description
    RIMS binding protein 2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Geotrypetes seraphini
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Geotrypetes
    Orthologs
    human mouse all
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    Genomic context

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    See RIMBP2 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    100 current aGeoSer1.1 (GCF_902459505.1) 8 NC_047091.1 (145107252..145706048)

    Chromosome 8 - NC_047091.1Genomic Context describing neighboring genes Neighboring gene RAN, member RAS oncogene family Neighboring gene syntaxin 2 Neighboring gene uncharacterized LOC117365687 Neighboring gene piwi like RNA-mediated gene silencing 1 Neighboring gene frizzled class receptor 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047091.1 Chromosome 8 Reference aGeoSer1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neuromuscular synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RIMS-binding protein 2

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Geotrypetes seraphini Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference aGeoSer1.1 Primary Assembly

    Genomic

    1. NC_047091.1 Reference aGeoSer1.1 Primary Assembly

      Range
      145107252..145706048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033956341.1 → XP_033812232.1  RIMS-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A6P8S3I5
      Conserved Domains (7) summary
      cd12012
      Location:1230 → 1291
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1356 → 1416
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1011
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain

    2. XM_033956346.1 → XP_033812237.1  RIMS-binding protein 2 isoform X6

      UniProtKB/TrEMBL
      A0A6P8S3I7
      Conserved Domains (7) summary
      cd12012
      Location:1230 → 1291
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1011
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain
      cl17036
      Location:1356 → 1392
      SH3; Src Homology 3 domain superfamily

    3. XM_033956345.1 → XP_033812236.1  RIMS-binding protein 2 isoform X5

      UniProtKB/TrEMBL
      A0A6P8S657
      Conserved Domains (7) summary
      cd12012
      Location:1230 → 1291
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1334 → 1394
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1011
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain

    4. XM_033956347.1 → XP_033812238.1  RIMS-binding protein 2 isoform X7

      UniProtKB/TrEMBL
      A0A6P8S519
      Conserved Domains (7) summary
      cd12012
      Location:1179 → 1240
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1305 → 1365
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1011
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain

    5. XM_033956348.1 → XP_033812239.1  RIMS-binding protein 2 isoform X8

      UniProtKB/TrEMBL
      A0A6P8S306
      Conserved Domains (7) summary
      cd12012
      Location:1177 → 1238
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1303 → 1363
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1011
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain

    6. XM_033956357.1 → XP_033812248.1  RIMS-binding protein 2 isoform X16

      UniProtKB/TrEMBL
      A0A6P8S531
      Conserved Domains (7) summary
      cd12012
      Location:1476 → 1537
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1602 → 1662
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1012
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain

    7. XM_033956342.1 → XP_033812233.1  RIMS-binding protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A6P8S514
      Conserved Domains (7) summary
      cd12012
      Location:1229 → 1290
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1355 → 1415
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1012
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain

    8. XM_033956350.1 → XP_033812241.1  RIMS-binding protein 2 isoform X10

      UniProtKB/TrEMBL
      A0A6P8S662
      Conserved Domains (7) summary
      cd12012
      Location:1178 → 1239
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1282 → 1342
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1012
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain

    9. XM_033956343.1 → XP_033812234.1  RIMS-binding protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A6P8S301
      Conserved Domains (7) summary
      cd12012
      Location:1223 → 1284
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1349 → 1409
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:483 → 543
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:766 → 1004
      PHA03247; large tegument protein UL36; Provisional
      COG1196
      Location:113 → 384
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00063
      Location:799 → 893
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:705 → 768
      fn3; Fibronectin type III domain

    10. XM_033956344.1 → XP_033812235.1  RIMS-binding protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A6P8S264
      Conserved Domains (7) summary
      cd12012
      Location:1222 → 1283
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1348 → 1408
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:483 → 543
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:766 → 1005
      PHA03247; large tegument protein UL36; Provisional
      COG1196
      Location:113 → 384
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00063
      Location:799 → 893
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:705 → 768
      fn3; Fibronectin type III domain

    11. XM_033956358.1 → XP_033812249.1  RIMS-binding protein 2 isoform X17

      UniProtKB/TrEMBL
      A0A6P8S315
      Conserved Domains (7) summary
      cd12012
      Location:1171 → 1232
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1275 → 1335
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:483 → 543
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:766 → 1005
      PHA03247; large tegument protein UL36; Provisional
      COG1196
      Location:113 → 384
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00063
      Location:799 → 893
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:705 → 768
      fn3; Fibronectin type III domain

    12. XM_033956349.1 → XP_033812240.1  RIMS-binding protein 2 isoform X9

      UniProtKB/TrEMBL
      A0A6P8S267
      Conserved Domains (7) summary
      cd12012
      Location:1230 → 1291
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1356 → 1416
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1011
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain

    13. XM_033956351.1 → XP_033812242.1  RIMS-binding protein 2 isoform X11

      UniProtKB/TrEMBL
      A0A6P8S3I9
      Conserved Domains (7) summary
      cd12012
      Location:1179 → 1240
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1283 → 1343
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1011
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain

    14. XM_033956353.1 → XP_033812244.1  RIMS-binding protein 2 isoform X12

      UniProtKB/TrEMBL
      A0A6P8S311
      Conserved Domains (7) summary
      cd12012
      Location:1178 → 1239
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1282 → 1342
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1012
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain

    15. XM_033956359.1 → XP_033812250.1  RIMS-binding protein 2 isoform X18

      UniProtKB/TrEMBL
      A0A6P8S279
      Conserved Domains (7) summary
      cd12012
      Location:1171 → 1232
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1275 → 1335
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:483 → 543
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:766 → 1005
      PHA03247; large tegument protein UL36; Provisional
      COG1196
      Location:113 → 384
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cd00063
      Location:799 → 893
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:705 → 768
      fn3; Fibronectin type III domain

    16. XM_033956354.1 → XP_033812245.1  RIMS-binding protein 2 isoform X13

      UniProtKB/TrEMBL
      A0A6P8S275
      Conserved Domains (6) summary
      cd12012
      Location:1230 → 1291
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1011
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain

    17. XM_033956355.1 → XP_033812246.1  RIMS-binding protein 2 isoform X14

      UniProtKB/TrEMBL
      A0A6P8S669
      Conserved Domains (5) summary
      cd12014
      Location:490 → 550
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:773 → 1011
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:806 → 900
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      TIGR02168
      Location:65 → 385
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:712 → 775
      fn3; Fibronectin type III domain

    18. XM_033956356.1 → XP_033812247.1  RIMS-binding protein 2 isoform X15

      UniProtKB/TrEMBL
      A0A6P8S3J2
      Conserved Domains (7) summary
      cd12012
      Location:933 → 994
      SH3_RIM-BP_2; Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12013
      Location:1059 → 1119
      SH3_RIM-BP_3; Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      cd12014
      Location:193 → 253
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      PHA03247
      Location:476 → 714
      PHA03247; large tegument protein UL36; Provisional
      cd00063
      Location:509 → 603
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam15175
      Location:3 → 94
      SPATA24; Spermatogenesis-associated protein 24
      cl21522
      Location:415 → 478
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    Nucleotide Protein
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