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    LOC117325666 E3 ubiquitin-protein ligase TRIM56-like [ Pecten maximus ]

    Gene ID: 117325666, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC117325666
    Gene description
    E3 ubiquitin-protein ligase TRIM56-like
    See related
    EnsemblRapid:LOC117325666
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pecten maximus
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Pecten
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    Genomic context

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    See LOC117325666 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current xPecMax1.1 (GCF_902652985.1) 4 NC_047018.1 (27049234..27061431, complement)

    Chromosome 4 - NC_047018.1Genomic Context describing neighboring genes Neighboring gene NAD kinase 2, mitochondrial-like Neighboring gene vasculin-like protein 1 Neighboring gene tripartite motif-containing protein 2-like Neighboring gene phosphoglucomutase-1-like Neighboring gene MAP kinase-interacting serine/threonine-protein kinase 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_047018.1 Chromosome 4 Reference xPecMax1.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase TRIM56-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pecten maximus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference xPecMax1.1

    Genomic

    1. NC_047018.1 Reference xPecMax1.1

      Range
      27049234..27061431 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033882073.1 → XP_033737964.1  E3 ubiquitin-protein ligase TRIM56-like isoform X2

      Related
      XP_033737964.1, XM_033882073.1
      Conserved Domains (4) summary
      cl18310
      Location:869 → 964
      NHL; NHL repeat unit of beta-propeller proteins
      cd19756
      Location:288 → 325
      Bbox2; B-box-type 2 zinc finger (Bbox2)
      cl00034
      Location:225 → 270
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:148 → 194
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_033882069.1 → XP_033737960.1  E3 ubiquitin-protein ligase TRIM56-like isoform X1

      Related
      XP_033737960.1, XM_033882069.1
      Conserved Domains (4) summary
      cl18310
      Location:906 → 1001
      NHL; NHL repeat unit of beta-propeller proteins
      cd19756
      Location:325 → 362
      Bbox2; B-box-type 2 zinc finger (Bbox2)
      cl00034
      Location:262 → 307
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:185 → 231
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    3. XM_033882072.1 → XP_033737963.1  E3 ubiquitin-protein ligase TRIM56-like isoform X2

      Related
      XP_033737963.1, XM_033882072.1
      Conserved Domains (4) summary
      cl18310
      Location:869 → 964
      NHL; NHL repeat unit of beta-propeller proteins
      cd19756
      Location:288 → 325
      Bbox2; B-box-type 2 zinc finger (Bbox2)
      cl00034
      Location:225 → 270
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:148 → 194
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    4. XM_033882071.1 → XP_033737962.1  E3 ubiquitin-protein ligase TRIM56-like isoform X1

      Related
      XP_033737962.1, XM_033882071.1
      Conserved Domains (4) summary
      cl18310
      Location:906 → 1001
      NHL; NHL repeat unit of beta-propeller proteins
      cd19756
      Location:325 → 362
      Bbox2; B-box-type 2 zinc finger (Bbox2)
      cl00034
      Location:262 → 307
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:185 → 231
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    5. XM_033882070.1 → XP_033737961.1  E3 ubiquitin-protein ligase TRIM56-like isoform X1

      Related
      XP_033737961.1, XM_033882070.1
      Conserved Domains (4) summary
      cl18310
      Location:906 → 1001
      NHL; NHL repeat unit of beta-propeller proteins
      cd19756
      Location:325 → 362
      Bbox2; B-box-type 2 zinc finger (Bbox2)
      cl00034
      Location:262 → 307
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:185 → 231
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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