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    LOC6897760 transcription factor mef2A [ Drosophila pseudoobscura ]

    Gene ID: 6897760, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC6897760
    Gene description
    transcription factor mef2A
    See related
    EnsemblRapid:LOC6897760
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila pseudoobscura
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC6897760 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    104 current UCI_Dpse_MV25 (GCF_009870125.1) 2 NC_046679.1 (25086195..25108182, complement)

    Chromosome 2 - NC_046679.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC6897757 Neighboring gene uncharacterized LOC6897759 Neighboring gene uncharacterized LOC6897761 Neighboring gene uncharacterized LOC13036393 Neighboring gene aquaporin-2 Neighboring gene unc-45 myosin chaperone Neighboring gene dnaJ homolog subfamily C member 30, mitochondrial Neighboring gene probable 18S rRNA (guanine-N(7))-methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046679.1 Chromosome 2 Reference UCI_Dpse_MV25 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
    2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    transcription factor mef2A; trithorax group protein osa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCI_Dpse_MV25 Primary Assembly

    Genomic

    1. NC_046679.1 Reference UCI_Dpse_MV25 Primary Assembly

      Range
      25086195..25108182 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003736749.3 → XP_003736797.3  transcription factor mef2A isoform X1

      UniProtKB/TrEMBL
      A0A6I8VWD3
      Related
      XP_003736797.3, XM_003736749.3
      Conserved Domains (1) summary
      cd16472
      Location:1138 → 1182
      RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins

    2. XM_015182540.2 → XP_015038026.2  transcription factor mef2A isoform X1

      UniProtKB/TrEMBL
      A0A6I8VWD3
      Related
      XP_015038026.2, XM_015182540.2
      Conserved Domains (1) summary
      cd16472
      Location:1138 → 1182
      RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins

    3. XM_033379351.1 → XP_033235242.1  transcription factor mef2A isoform X1

      UniProtKB/TrEMBL
      A0A6I8VWD3
      Related
      XP_033235242.1, XM_033379351.1
      Conserved Domains (1) summary
      cd16472
      Location:1138 → 1182
      RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins

    4. XM_033379377.1 → XP_033235268.1  trithorax group protein osa isoform X2

      UniProtKB/TrEMBL
      A0A6I8VWD8
      Related
      XP_033235268.1, XM_033379377.1
      Conserved Domains (1) summary
      cd16472
      Location:808 → 852
      RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins

    5. XM_033379372.1 → XP_033235263.1  transcription factor mef2A isoform X1

      UniProtKB/TrEMBL
      A0A6I8VWD3
      Related
      XP_033235263.1, XM_033379372.1
      Conserved Domains (1) summary
      cd16472
      Location:1138 → 1182
      RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins

    6. XM_033379363.1 → XP_033235254.1  transcription factor mef2A isoform X1

      UniProtKB/TrEMBL
      A0A6I8VWD3
      Related
      XP_033235254.1, XM_033379363.1
      Conserved Domains (1) summary
      cd16472
      Location:1138 → 1182
      RING-H2_RNF38_like; RING finger, H2 subclass, found in RING finger proteins RNF38, RNF44, and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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