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    Suv39h1 SUV39H1 histone lysine methyltransferase [ Rattus rattus (black rat) ]

    Gene ID: 116888696, updated on 18-Mar-2024

    Summary

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    Gene symbol
    Suv39h1
    Gene description
    SUV39H1 histone lysine methyltransferase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus rattus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Orthologs
    human mouse all
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    Genomic context

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    See Suv39h1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current Rrattus_CSIRO_v1 (GCF_011064425.1) X NC_046172.1 (15465315..15478406, complement)

    Chromosome X - NC_046172.1Genomic Context describing neighboring genes Neighboring gene annexin A7-like Neighboring gene 40S ribosomal protein S14-like Neighboring gene glyoxalase domain containing 5 Neighboring gene U6 spliceosomal RNA Neighboring gene WASP actin nucleation promoting factor Neighboring gene WD repeat domain 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046172.1 Chromosome X Reference Rrattus_CSIRO_v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H3K9 methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SUV39H1
    Names
    suppressor of variegation 3-9 homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Rattus rattus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rrattus_CSIRO_v1 Primary Assembly

    Genomic

    1. NC_046172.1 Reference Rrattus_CSIRO_v1 Primary Assembly

      Range
      15465315..15478406 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032889986.1 → XP_032745877.1  LOW QUALITY PROTEIN: histone-lysine N-methyltransferase SUV39H1

      Conserved Domains (2) summary
      cd18639
      Location:43 → 91
      CD_SUV39H1_like; chromodomain of histone methyltransferase SUV39H1, and similar proteins
      cd10525
      Location:156 → 410
      SET_SUV39H1; SET domain (including pre-SET and post-SET domains) found in suppressor of variegation 3-9 homolog 1 (SUV39H1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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