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    PLEKHF1 pleckstrin homology and FYVE domain containing 1 [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

    Gene ID: 116815657, updated on 18-Mar-2024

    Summary

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    Gene symbol
    PLEKHF1
    Gene description
    pleckstrin homology and FYVE domain containing 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonoidis abingdonii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
    Orthologs
    human mouse all
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    Genomic context

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    See PLEKHF1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022647672.1 (86576..97949)

    NW_022647672.1Genomic Context describing neighboring genes Neighboring gene POP4 homolog, ribonuclease P/MRP subunit Neighboring gene chromosome unknown C19orf12 homolog Neighboring gene uncharacterized protein F13E9.13, mitochondrial-like Neighboring gene cyclin E1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022647672 Unplaced Scaffold Reference ASM359739v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pleckstrin homology domain-containing family F member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM359739v1

    Genomic

    1. NW_022647672.1 Reference ASM359739v1

      Range
      86576..97949
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032764186.1 → XP_032620077.1  pleckstrin homology domain-containing family F member 1

      Conserved Domains (2) summary
      cd01218
      Location:10 → 132
      PH_Phafin2-like; Phafin2 (also called EAPF, FLJ13187, ZFYVE18 or PLEKHF2) Pleckstrin Homology (PH) domain
      cd15754
      Location:151 → 214
      FYVE_PKHF1; FYVE domain found in protein containing both PH and FYVE domains 1 (phafin-1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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