U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    HTATSF1 HIV-1 Tat specific factor 1 [ Chelonoidis abingdonii (Abingdon island giant tortoise) ]

    Gene ID: 116820586, updated on 18-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    HTATSF1
    Gene description
    HIV-1 Tat specific factor 1
    See related
    Ensembl:ENSCABG00000009981
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonoidis abingdonii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Testudinoidea; Testudinidae; Chelonoidis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See HTATSF1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current ASM359739v1 (GCF_003597395.1) Unplaced Scaffold NW_022641322.1 (1002766..1021853)

    NW_022641322.1Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor G4 Neighboring gene bombesin receptor subtype 3 Neighboring gene vestigial like family member 1 Neighboring gene vertebrate ancient opsin-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_022641322 Unplaced Scaffold Reference ASM359739v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    HIV Tat-specific factor 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Chelonoidis abingdonii Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM359739v1

    Genomic

    1. NW_022641322.1 Reference ASM359739v1

      Range
      1002766..1021853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032773188.1 → XP_032629079.1  HIV Tat-specific factor 1

      UniProtKB/TrEMBL
      A0A8C0GX15
      Related
      ENSCABP00000013305.1, ENSCABT00000014597.1
      Conserved Domains (2) summary
      cd12281
      Location:136 → 226
      RRM1_TatSF1_like; RNA recognition motif 1 (RRM1) found in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
      cd12282
      Location:267 → 357
      RRM2_TatSF1_like; RNA recognition motif 2 (RRM2) found in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.