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    PXDN peroxidasin [ Chiroxiphia lanceolata (lance-tailed manakin) ]

    Gene ID: 116784524, updated on 3-Aug-2024

    Summary

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    Gene symbol
    PXDN
    Gene description
    peroxidasin
    See related
    EnsemblRapid:ENSCLNG00000000780
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chiroxiphia lanceolata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Pipridae; Chiroxiphia
    Orthologs
    human mouse all
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    Genomic context

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    See PXDN in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current bChiLan1.pri (GCF_009829145.1) 3 NC_045639.1 (97900038..97992595, complement)

    Chromosome 3 - NC_045639.1Genomic Context describing neighboring genes Neighboring gene thyroid peroxidase Neighboring gene uncharacterized LOC116784800 Neighboring gene myelin transcription factor 1 like Neighboring gene uncharacterized LOC116785073

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045639.1 Chromosome 3 Reference bChiLan1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxidasin homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chiroxiphia lanceolata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bChiLan1.pri

    Genomic

    1. NC_045639.1 Reference bChiLan1.pri

      Range
      97900038..97992595 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032683230.1 → XP_032539121.1  peroxidasin homolog isoform X2

      Related
      ENSCLNP00000001441.1, ENSCLNT00000001523.1
      Conserved Domains (11) summary
      cd05745
      Location:432 → 505
      Ig3_Peroxidasin; Third immunoglobulin (Ig)-like domain of peroxidasin
      cd05746
      Location:528 → 596
      Ig4_Peroxidasin; Fourth immunoglobulin (Ig)-like domain of peroxidasin
      cd09826
      Location:850 → 1289
      peroxidasin_like; Animal heme peroxidase domain of peroxidasin and related proteins
      smart00409
      Location:334 → 415
      IG; Immunoglobulin
      COG4886
      Location:64 → 228
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:74 → 88
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:55 → 73
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00093
      Location:1404 → 1456
      VWC; von Willebrand factor type C domain
      pfam07679
      Location:232 → 319
      I-set; Immunoglobulin I-set domain
      pfam13855
      Location:121 → 180
      LRR_8; Leucine rich repeat
      cd00096
      Location:232 → 236
      Ig; Ig strand A [structural motif]

    2. XM_032683229.1 → XP_032539120.1  peroxidasin homolog isoform X1

      Related
      ENSCLNP00000001353.1, ENSCLNT00000001432.1
      Conserved Domains (11) summary
      cd05745
      Location:456 → 529
      Ig3_Peroxidasin; Third immunoglobulin (Ig)-like domain of peroxidasin
      cd05746
      Location:552 → 620
      Ig4_Peroxidasin; Fourth immunoglobulin (Ig)-like domain of peroxidasin
      TIGR00864
      Location:175 → 286
      PCC; polycystin cation channel protein
      cd09826
      Location:874 → 1313
      peroxidasin_like; Animal heme peroxidase domain of peroxidasin and related proteins
      smart00409
      Location:358 → 439
      IG; Immunoglobulin
      sd00031
      Location:122 → 145
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:75 → 97
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00093
      Location:1428 → 1480
      VWC; von Willebrand factor type C domain
      pfam07679
      Location:256 → 343
      I-set; Immunoglobulin I-set domain
      pfam13855
      Location:121 → 180
      LRR_8; Leucine rich repeat
      cd00096
      Location:256 → 260
      Ig; Ig strand A [structural motif]

    3. XM_032683231.1 → XP_032539122.1  peroxidasin homolog isoform X3

      Conserved Domains (10) summary
      cd05745
      Location:456 → 529
      Ig3_Peroxidasin; Third immunoglobulin (Ig)-like domain of peroxidasin
      cd05746
      Location:552 → 620
      Ig4_Peroxidasin; Fourth immunoglobulin (Ig)-like domain of peroxidasin
      TIGR00864
      Location:175 → 286
      PCC; polycystin cation channel protein
      cd09826
      Location:874 → 1259
      peroxidasin_like; Animal heme peroxidase domain of peroxidasin and related proteins
      smart00409
      Location:358 → 439
      IG; Immunoglobulin
      sd00031
      Location:122 → 145
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:75 → 97
      LRR_RI; leucine-rich repeat [structural motif]
      pfam07679
      Location:256 → 343
      I-set; Immunoglobulin I-set domain
      pfam13855
      Location:121 → 180
      LRR_8; Leucine rich repeat
      cd00096
      Location:256 → 260
      Ig; Ig strand A [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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