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    RNF180 ring finger protein 180 [ Camelus ferus (Wild Bactrian camel) ]

    Gene ID: 102519811, updated on 10-Mar-2024

    Summary

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    Gene symbol
    RNF180
    Gene description
    ring finger protein 180
    Locus tag
    CB1_000872010
    See related
    EnsemblRapid:ENSCFEG00005001414
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Camelus ferus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus
    Orthologs
    human mouse all
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    Genomic context

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    See RNF180 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current BCGSAC_Cfer_1.0 (GCF_009834535.1) 3 NC_045698.1 (42573906..42738446)
    101 previous assembly CB1 (GCF_000311805.1) Unplaced Scaffold NW_006211047.1 (1372112..1536112, complement)

    Chromosome 3 - NC_045698.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene 5-hydroxytryptamine receptor 1A Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene uncharacterized LOC116661282

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in norepinephrine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in serotonin metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNF180

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Camelus ferus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BCGSAC_Cfer_1.0 Primary Assembly

    Genomic

    1. NC_045698.1 Reference BCGSAC_Cfer_1.0 Primary Assembly

      Range
      42573906..42738446
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032468350.1 → XP_032324241.1  E3 ubiquitin-protein ligase RNF180

      UniProtKB/TrEMBL
      A0A8B8S205
      Related
      ENSCFEP00005001996.1, ENSCFET00005002334.1
      Conserved Domains (2) summary
      COG5574
      Location:449 → 539
      PEX10; RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
      cd16554
      Location:496 → 539
      RING-HC_RNF180; RING finger, HC subclass, found in RING finger protein 180 (RNF180) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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