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    RHO rhodopsin [ Phoca vitulina (harbor seal) ]

    Gene ID: 116637038, updated on 18-Mar-2024

    Summary

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    Gene symbol
    RHO
    Gene description
    rhodopsin
    See related
    EnsemblRapid:ENSPVHG00000001386
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phoca vitulina
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Phoca
    Also known as
    RHO1
    Orthologs
    human mouse all
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    Genomic context

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    See RHO in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    100 current GSC_HSeal_1.0 (GCF_004348235.1) Unplaced Scaffold NW_022589716.1 (42578073..42584569)

    NW_022589716.1Genomic Context describing neighboring genes Neighboring gene methyl-CpG binding domain 4, DNA glycosylase Neighboring gene intraflagellar transport 122 Neighboring gene U6 spliceosomal RNA Neighboring gene histone H1oo Neighboring gene plexin D1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022589716 Unplaced Scaffold Reference GSC_HSeal_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phototransduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in photoreceptor outer segment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rhodopsin
    Names
    rod opsin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phoca vitulina Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GSC_HSeal_1.0 Primary Assembly

    Genomic

    1. NW_022589716.1 Reference GSC_HSeal_1.0 Primary Assembly

      Range
      42578073..42584569
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032412232.1 → XP_032268123.1  rhodopsin

      UniProtKB/Swiss-Prot
      O62794
      Related
      ENSPVHP00000001598.1, ENSPVHT00000001867.1
      Conserved Domains (2) summary
      pfam10413
      Location:3 → 37
      Rhodopsin_N; Amino terminal of the G-protein receptor rhodopsin
      cd15080
      Location:38 → 317
      7tmA_MWS_opsin; medium wave-sensitive opsins, member of the class A family of seven-transmembrane G protein-coupled receptors
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O62794.1 GenPept UniProtKB/Swiss-Prot:O62794

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