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    NCAM1 neural cell adhesion molecule 1 [ Aythya fuligula (tufted duck) ]

    Gene ID: 116497910, updated on 25-Jun-2024

    Summary

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    Gene symbol
    NCAM1
    Gene description
    neural cell adhesion molecule 1
    See related
    EnsemblRapid:ENSAFUG00000003641
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aythya fuligula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
    Orthologs
    human mouse all
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    Genomic context

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    See NCAM1 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current bAytFul2.pri (GCF_009819795.1) 22 NC_045580.1 (7028807..7132017, complement)

    Chromosome 22 - NC_045580.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and kinase domain containing 1 Neighboring gene tetratricopeptide repeat domain 12 Neighboring gene beta-carotene oxygenase 2 Neighboring gene 6-pyruvoyltetrahydropterin synthase Neighboring gene interleukin 18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045580.1 Chromosome 22 Reference bAytFul2.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neural cell adhesion molecule 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bAytFul2.pri Primary Assembly

    Genomic

    1. NC_045580.1 Reference bAytFul2.pri Primary Assembly

      Range
      7028807..7132017 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032201940.1 → XP_032057831.1  neural cell adhesion molecule 1 isoform X2

      UniProtKB/TrEMBL
      A0A6J3E2K2
      Related
      ENSAFUP00000004906.1, ENSAFUT00000006173.1
      Conserved Domains (8) summary
      cd05869
      Location:306 → 402
      IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
      smart00409
      Location:411 → 494
      IG; Immunoglobulin
      cd00063
      Location:498 → 595
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam05109
      Location:766 → 1096
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam00041
      Location:602 → 685
      fn3; Fibronectin type III domain
      cd00096
      Location:211 → 216
      Ig; Ig strand A [structural motif]
      cd05865
      Location:20 → 116
      IgI_1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule (NCAM-1); member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:211 → 307
      Ig; Immunoglobulin domain

    2. XM_032201946.1 → XP_032057837.1  neural cell adhesion molecule 1 isoform X6

      UniProtKB/TrEMBL
      A0A6J3E7J5
      Conserved Domains (7) summary
      cd05869
      Location:306 → 402
      IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
      smart00410
      Location:411 → 494
      IG_like; Immunoglobulin like
      cd00063
      Location:498 → 595
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:603 → 686
      fn3; Fibronectin type III domain
      cd00096
      Location:211 → 216
      Ig; Ig strand A [structural motif]
      cd05865
      Location:20 → 116
      IgI_1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule (NCAM-1); member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:211 → 307
      Ig; Immunoglobulin domain

    3. XM_032201944.1 → XP_032057835.1  neural cell adhesion molecule 1 isoform X4

      UniProtKB/TrEMBL
      A0A6J3E6V0
      Conserved Domains (8) summary
      cd05869
      Location:306 → 412
      IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
      smart00409
      Location:124 → 190
      IG; Immunoglobulin
      smart00410
      Location:421 → 504
      IG_like; Immunoglobulin like
      cd00063
      Location:508 → 605
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:613 → 696
      fn3; Fibronectin type III domain
      cd00096
      Location:211 → 216
      Ig; Ig strand A [structural motif]
      cd05865
      Location:20 → 116
      IgI_1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule (NCAM-1); member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:211 → 307
      Ig; Immunoglobulin domain

    4. XM_032201941.1 → XP_032057832.1  neural cell adhesion molecule 1 isoform X3

      UniProtKB/TrEMBL
      A0A6J3E7J2
      Conserved Domains (8) summary
      cd05869
      Location:306 → 412
      IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
      smart00409
      Location:124 → 190
      IG; Immunoglobulin
      smart00410
      Location:421 → 504
      IG_like; Immunoglobulin like
      cd00063
      Location:508 → 605
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:618 → 701
      fn3; Fibronectin type III domain
      cd00096
      Location:211 → 216
      Ig; Ig strand A [structural motif]
      cd05865
      Location:20 → 116
      IgI_1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule (NCAM-1); member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:211 → 307
      Ig; Immunoglobulin domain

    5. XM_032201939.1 → XP_032057830.1  neural cell adhesion molecule 1 isoform X1

      UniProtKB/TrEMBL
      A0A6J3E6U5
      Conserved Domains (8) summary
      cd05869
      Location:306 → 412
      IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
      smart00409
      Location:421 → 504
      IG; Immunoglobulin
      cd00063
      Location:508 → 605
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam05109
      Location:782 → 1112
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam00041
      Location:618 → 701
      fn3; Fibronectin type III domain
      cd00096
      Location:211 → 216
      Ig; Ig strand A [structural motif]
      cd05865
      Location:20 → 116
      IgI_1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule (NCAM-1); member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:211 → 307
      Ig; Immunoglobulin domain

    6. XM_032201945.1 → XP_032057836.1  neural cell adhesion molecule 1 isoform X5

      UniProtKB/TrEMBL
      A0A6J3E2K6
      Conserved Domains (8) summary
      cd05869
      Location:306 → 402
      IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
      smart00409
      Location:124 → 190
      IG; Immunoglobulin
      smart00410
      Location:411 → 494
      IG_like; Immunoglobulin like
      cd00063
      Location:498 → 595
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:602 → 685
      fn3; Fibronectin type III domain
      cd00096
      Location:211 → 216
      Ig; Ig strand A [structural motif]
      cd05865
      Location:20 → 116
      IgI_1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule (NCAM-1); member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:211 → 307
      Ig; Immunoglobulin domain

    7. XM_032201947.1 → XP_032057838.1  neural cell adhesion molecule 1 isoform X7

      UniProtKB/TrEMBL
      A0A6J3E8Y9
      Conserved Domains (8) summary
      cd05869
      Location:306 → 402
      IgI_NCAM-1; Immunoglobulin (Ig)-like I-set domain of Neural Cell Adhesion Molecule 1 (NCAM-1)
      smart00409
      Location:124 → 190
      IG; Immunoglobulin
      smart00410
      Location:411 → 494
      IG_like; Immunoglobulin like
      cd00063
      Location:498 → 595
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:603 → 686
      fn3; Fibronectin type III domain
      cd00096
      Location:211 → 216
      Ig; Ig strand A [structural motif]
      cd05865
      Location:20 → 116
      IgI_1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule (NCAM-1); member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:211 → 307
      Ig; Immunoglobulin domain
    Nucleotide Protein
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