U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    MARF1 meiosis regulator and mRNA stability factor 1 [ Aythya fuligula (tufted duck) ]

    Gene ID: 116495122, updated on 25-Jun-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    MARF1
    Gene description
    meiosis regulator and mRNA stability factor 1
    See related
    EnsemblRapid:ENSAFUG00000008203
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Aythya fuligula
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See MARF1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    100 current bAytFul2.pri (GCF_009819795.1) 15 NC_045573.1 (9705971..9730866)

    Chromosome 15 - NC_045573.1Genomic Context describing neighboring genes Neighboring gene myosin heavy chain 11 Neighboring gene nudE neurodevelopment protein 1 Neighboring gene bMERB domain containing 1 Neighboring gene MPV17 mitochondrial inner membrane protein like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_045573.1 Chromosome 15 Reference bAytFul2.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables CCR4-NOT complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA base-pairing translational repressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    meiosis regulator and mRNA stability factor 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Aythya fuligula Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bAytFul2.pri Primary Assembly

    Genomic

    1. NC_045573.1 Reference bAytFul2.pri Primary Assembly

      Range
      9705971..9730866
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032197385.1 → XP_032053276.1  meiosis regulator and mRNA stability factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A6J3DP78
      Related
      ENSAFUP00000011292.1, ENSAFUT00000013703.1
      Conserved Domains (12) summary
      cd09977
      Location:876 → 937
      LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
      cd09978
      Location:1004 → 1074
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:1100 → 1171
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1176 → 1247
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1260 → 1330
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1336 → 1406
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1412 → 1484
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1487 → 1562
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      COG0724
      Location:693 → 871
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd10910
      Location:346 → 468
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
      cd12256
      Location:787 → 875
      RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
      cl17169
      Location:504 → 589
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_032197386.1 → XP_032053277.1  meiosis regulator and mRNA stability factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A6J3DUH3
      Related
      ENSAFUP00000011302.1, ENSAFUT00000013714.1
      Conserved Domains (12) summary
      cd09977
      Location:876 → 937
      LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
      cd09978
      Location:1004 → 1074
      LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
      cd09979
      Location:1100 → 1171
      LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
      cd09980
      Location:1176 → 1247
      LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
      cd09981
      Location:1260 → 1330
      LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
      cd09982
      Location:1336 → 1406
      LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
      cd09983
      Location:1412 → 1484
      LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
      cd09984
      Location:1487 → 1562
      LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
      COG0724
      Location:693 → 871
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd10910
      Location:346 → 468
      PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
      cd12256
      Location:787 → 875
      RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
      cl17169
      Location:504 → 589
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.