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    CHL1 cell adhesion molecule L1 like [ Hylobates moloch (silvery gibbon) ]

    Gene ID: 116466666, updated on 18-Mar-2024

    Summary

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    Gene symbol
    CHL1
    Gene description
    cell adhesion molecule L1 like
    See related
    EnsemblRapid:ENSHMOG00010002925
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hylobates moloch
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Hylobates
    Orthologs
    human mouse all
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    Genomic context

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    See CHL1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2023_07 current HMol_V3 (GCF_009828535.3) Unplaced Scaffold NW_026652279.1 (17262666..17476582)
    100 previous assembly HMol (GCF_009828535.1) Unplaced Scaffold NW_022454845.1 (17262499..17476582)

    NW_026652279.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene uncharacterized LOC116466667 Neighboring gene U6 spliceosomal RNA Neighboring gene contactin 6 Neighboring gene large ribosomal subunit protein uL23-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neural cell adhesion molecule L1-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009828535.3-RS_2023_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference HMol_V3

    Genomic

    1. NW_026652279.1 Reference HMol_V3

      Range
      17262666..17476582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032149510.1 → XP_032005401.1  neural cell adhesion molecule L1-like protein isoform X1

      Conserved Domains (9) summary
      smart00409
      Location:447 → 525
      IG; Immunoglobulin
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1202
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:548 → 617
      Ig; Immunoglobulin domain
      cd04978
      Location:348 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:262 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains
      cd05845
      Location:135 → 225
      IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:35 → 126
      Ig; Immunoglobulin domain

    2. XM_032149515.2 → XP_032005406.1  neural cell adhesion molecule L1-like protein isoform X2

      Conserved Domains (9) summary
      smart00409
      Location:431 → 509
      IG; Immunoglobulin
      cd00063
      Location:612 → 701
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:715 → 796
      fn3; Fibronectin type III domain
      pfam13882
      Location:1105 → 1186
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:532 → 601
      Ig; Immunoglobulin domain
      cd04978
      Location:332 → 419
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:246 → 328
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains
      cd05845
      Location:135 → 225
      IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:35 → 126
      Ig; Immunoglobulin domain

    3. XM_032149512.2 → XP_032005403.1  neural cell adhesion molecule L1-like protein isoform X1

      Conserved Domains (9) summary
      smart00409
      Location:447 → 525
      IG; Immunoglobulin
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1202
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:548 → 617
      Ig; Immunoglobulin domain
      cd04978
      Location:348 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:262 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains
      cd05845
      Location:135 → 225
      IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:35 → 126
      Ig; Immunoglobulin domain

    4. XM_058437170.1 → XP_058293153.1  neural cell adhesion molecule L1-like protein isoform X3

      Related
      ENSHMOP00010003584.1, ENSHMOT00010004658.1

    5. XM_058437169.1 → XP_058293152.1  neural cell adhesion molecule L1-like protein isoform X2

      Related
      ENSHMOP00010003577.1, ENSHMOT00010004652.1

    6. XM_032149514.2 → XP_032005405.1  neural cell adhesion molecule L1-like protein isoform X1

      Conserved Domains (9) summary
      smart00409
      Location:447 → 525
      IG; Immunoglobulin
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1202
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:548 → 617
      Ig; Immunoglobulin domain
      cd04978
      Location:348 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:262 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains
      cd05845
      Location:135 → 225
      IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:35 → 126
      Ig; Immunoglobulin domain

    7. XM_032149511.2 → XP_032005402.1  neural cell adhesion molecule L1-like protein isoform X1

      Conserved Domains (9) summary
      smart00409
      Location:447 → 525
      IG; Immunoglobulin
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1202
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:548 → 617
      Ig; Immunoglobulin domain
      cd04978
      Location:348 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:262 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains
      cd05845
      Location:135 → 225
      IgI_2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM), and similar domains; member of the I-set of Ig superfamily (IgSF) domains
      cl11960
      Location:35 → 126
      Ig; Immunoglobulin domain

    8. XM_058437168.1 → XP_058293151.1  neural cell adhesion molecule L1-like protein isoform X1

      Related
      ENSHMOP00010003572.1, ENSHMOT00010004646.1
    Nucleotide Protein
    Heading Accession and Version

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