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    E3 ubiquitin-protein ligase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831972, updated on 18-Sep-2024

    Summary

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    Official Full Name
    E3 ubiquitin-protein ligase
    Primary source
    TAIR:AT5G18540
    Locus tag
    AT5G18540
    See related
    Araport:AT5G18540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28N17.20; T28N17_20
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (6153785..6156309)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene Aminotransferase-like, plant mobile domain family protein Neighboring gene Lung seven transmembrane receptor family protein Neighboring gene protein serine/threonine kinase Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene Integrase-type DNA-binding superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036822.2
    NM_001343551.1
    NM_001343552.1
    NM_121859.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase
    NP_001031899.1
    • unknown protein; Has 1784 Blast hits to 634 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 1013; Fungi - 200; Plants - 288; Viruses - 0; Other Eukaryotes - 283 (source: NCBI BLink).
    NP_197355.2
    • unknown protein; Has 2026 Blast hits to 792 proteins in 129 species: Archae - 2; Bacteria - 12; Metazoa - 1126; Fungi - 267; Plants - 292; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6153785..6156309
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036822.2 → NP_001031899.1  E3 ubiquitin-protein ligase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031899.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UK53, F4JY14

    2. NM_121859.3 → NP_197355.2  E3 ubiquitin-protein ligase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197355.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178ULJ7, Q6GKY0

    3. NM_001343551.1 → NP_001330086.1  E3 ubiquitin-protein ligase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9P5, Q0WRG8

    4. NM_001343552.1 → NP_001330087.1  E3 ubiquitin-protein ligase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9P5, Q0WRG8
    Nucleotide Protein
    Heading Accession and Version

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