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    ABCI20 non-intrinsic ABC protein 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831709, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABCI20
    Official Full Name
    non-intrinsic ABC protein 9
    Primary source
    TAIR:AT5G02270
    Locus tag
    AT5G02270
    See related
    Araport:AT5G02270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9; ATNAP9; ATP-binding cassette I20; NAP9; non-intrinsic ABC protein 9; T1E22.30; T1E22_30
    Summary
    member of NAP subfamily
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    Genomic context

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    See ABCI20 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (467038..469272, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Ribonuclease II/R family protein Neighboring gene expansin A9 Neighboring gene SNARE-like superfamily protein Neighboring gene Protein kinase superfamily protein Neighboring gene proteolysis 6 Neighboring gene myb domain protein 3r-5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Non-intrinsic ATP-binding cassette proteins ABCI19, ABCI20 and ABCI21 modulate cytokinin response at the endoplasmic reticulum in Arabidopsis thaliana. Kim A, et al. Plant Cell Rep, 2020 Apr. PMID 32016506, Free PMC Article
    2. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Non-intrinsic ATP-binding cassette proteins ABCI19, ABCI20 and ABCI21 modulate cytokinin response at the endoplasmic reticulum in Arabidopsis thaliana.
      Title: Non-intrinsic ATP-binding cassette proteins ABCI19, ABCI20 and ABCI21 modulate cytokinin response at the endoplasmic reticulum in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203276.1
    NM_120305.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		  

    General protein information

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    Preferred Names
    non-intrinsic ABC protein 9
    NP_001190205.1
    • non-intrinsic ABC protein 9 (NAP9); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G03905.1).
    NP_195847.1
    • non-intrinsic ABC protein 9 (NAP9); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G03905.1); Has 211585 Blast hits to 200727 proteins in 3497 species: Archae - 4296; Bacteria - 180035; Metazoa - 2718; Fungi - 1612; Plants - 1620; Viruses - 2; Other Eukaryotes - 21302 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      467038..469272 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120305.3 → NP_195847.1  non-intrinsic ABC protein 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195847.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LZ98
      UniProtKB/TrEMBL
      A0A178UDR1, A0A5S9Y0N5, A0A654FXI8, A0A7G2FBL0
      Conserved Domains (1) summary
      COG4586
      Location:29 → 247
      COG4586; ABC-type uncharacterized transport system, ATPase component [General function prediction only]

    2. NM_001203276.1 → NP_001190205.1  non-intrinsic ABC protein 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190205.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UDR1, A0A7G2FBL0, F4KCB8
      Conserved Domains (2) summary
      COG1122
      Location:14 → 261
      EcfA2; Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only]
      cl21455
      Location:14 → 261
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LZ98.1

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