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    LOC120125565 ABC transporter D family member 1-like [ Hibiscus syriacus ]

    Gene ID: 120125565, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC120125565
    Gene description
    ABC transporter D family member 1-like
    Locus tag
    F3Y22_tig00110432pilonHSYRG00070
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hibiscus syriacus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus
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    Genomic context

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    See LOC120125565 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    100 current ASM638163v2 (GCF_006381635.1) Unplaced Scaffold NW_024062735.1 (491046..514083)

    NW_024062735.1Genomic Context describing neighboring genes Neighboring gene PLAT domain-containing protein 3-like Neighboring gene uncharacterized LOC120125567 Neighboring gene oxidation resistance protein 1-like Neighboring gene transfer RNA arginine (anticodon ACG)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024062735 Unplaced Scaffold Reference ASM638163v2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables long-chain fatty acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid beta-oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in long-chain fatty acid import into peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peroxisome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in very long-chain fatty acid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter D family member 1-like
    Names
    ABC transporter D family member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hibiscus syriacus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM638163v2 Primary Assembly

    Genomic

    1. NW_024062735.1 Reference ASM638163v2 Primary Assembly

      Range
      491046..514083
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039143968.1 → XP_038999899.1  ABC transporter D family member 1-like

      UniProtKB/TrEMBL
      A0A6A2ZWN9
      Conserved Domains (1) summary
      TIGR00954
      Location:47 → 656
      3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein
    Nucleotide Protein
    Heading Accession and Version

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