U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    rasip1 Ras interacting protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100493560, updated on 14-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    rasip1provided by Xenbase
    Official Full Name
    Ras interacting protein 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-6033970
    See related
    AllianceGenome:Xenbase:XB-GENE-6033970
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Acts upstream of or within with a positive effect on angiogenesis and vasculogenesis. Is expressed in cardiovascular system. Orthologous to human RASIP1 (Ras interacting protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See rasip1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (105685546..105714325, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (97717301..97744309, complement)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene netrin 5 Neighboring gene myoskeletin Neighboring gene C-Jun-amino-terminal kinase-interacting protein 4 Neighboring gene interleukin 11

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Rasip1 is required for endothelial cell motility, angiogenesis and vessel formation. Xu K, et al. Dev Biol, 2009 May 15. PMID 19272373, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables GTPase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in angiogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within_positive_effect angiogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of Rho protein signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within_positive_effect vasculogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cell-cell junction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ras-interacting protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      105685546..105714325 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004916253.4 → XP_004916310.1  ras-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8J0R582
      Conserved Domains (2) summary
      cd15472
      Location:520 → 885
      Myo5p-like_CBD_Rasip1; cargo binding domain of myosin 5-like of Ras-interacting protein 1
      cd17116
      Location:112 → 223
      RA_Radil_like; Ras-associating (RA) domain found in ras-associating and dilute domain-containing protein (Radil) and similar proteins

    2. XM_004916254.4 → XP_004916311.1  ras-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8J0R5T5
      Conserved Domains (2) summary
      cd15472
      Location:520 → 884
      Myo5p-like_CBD_Rasip1; cargo binding domain of myosin 5-like of Ras-interacting protein 1
      cd17116
      Location:112 → 223
      RA_Radil_like; Ras-associating (RA) domain found in ras-associating and dilute domain-containing protein (Radil) and similar proteins

    3. XM_002939962.5 → XP_002940008.2  ras-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8J0QRK1
      Conserved Domains (2) summary
      cd15472
      Location:478 → 843
      Myo5p-like_CBD_Rasip1; cargo binding domain of myosin 5-like of Ras-interacting protein 1
      pfam00788
      Location:82 → 183
      RA; Ras association (RalGDS/AF-6) domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.