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    Rb97D Ribonuclear protein at 97D [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43231, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rb97Dprovided by FlyBase
    Official Full Name
    Ribonuclear protein at 97Dprovided by FlyBase
    Primary source
    FLYBASE:FBgn0004903
    Locus tag
    Dmel_CG6354
    See related
    AllianceGenome:FB:FBgn0004903
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG6354; Dmel\CG6354; Hrb97D; ms(3)03445; R16; rb97d; Rb97D1; rbf; RBP97D
    Summary
    Predicted to enable mRNA binding activity. Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Rb97D in Genome Data Viewer
    Location:
    97D3-97D3; 3-92 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (26872129..26875742, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (22697851..22701464, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Histone H2A variant Neighboring gene Secreted protein, acidic, cysteine-rich Neighboring gene male sterile (3) K81 Neighboring gene uncharacterized protein Neighboring gene rough

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Rb97D gene encodes a potential RNA-binding protein required for spermatogenesis in Drosophila. Karsch-Mizrachi I, et al. Nucleic Acids Res, 1993 May 11. PMID 8502565, Free PMC Article
    2. The predicted collagen-binding domains of Drosophila SPARC are essential for survival and for collagen IV distribution and assembly into basement membranes. Duncan S, et al. Dev Biol, 2020 May 15. PMID 32087195
    3. Fruit(less) flies provide a clue. Burgoyne PS. Nature, 1996 Jun 27. PMID 8657275
    4. Association of RB97D, an RRM protein required for male fertility, with a Y chromosome lampbrush loop in Drosophila spermatocytes. Heatwole VM, et al. Chromosoma, 1996 Dec. PMID 8939821
    5. Translational control in spermatogenesis. Schäfer M, et al. Dev Biol, 1995 Dec. PMID 8612956

    See all (51) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ribonuclear protein at 97D
    Names
    CG6354-PA
    CG6354-PB
    CG6354-PC
    CG6354-PD
    CG6354-PE
    CG6354-PF
    CG6354-PG
    CG6354-PH
    CG6354-PI
    Rb97D-PA
    Rb97D-PB
    Rb97D-PC
    Rb97D-PD
    Rb97D-PE
    Rb97D-PF
    Rb97D-PG
    Rb97D-PH
    Rb97D-PI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      26872129..26875742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_079796.5 → NP_524520.1  ribonuclear protein at 97D, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_524520.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q02926, Q8IHB8, Q9VBA9
      UniProtKB/TrEMBL
      A4V3H1
      Related
      FBpp0084463
      Conserved Domains (2) summary
      cd12328
      Location:124 → 196
      RRM2_hnRNPA_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A subfamily
      cd12578
      Location:33 → 110
      RRM1_hnRNPA_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A subfamily

    2. NM_001014677.2 → NP_001014677.1  ribonuclear protein at 97D, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001014677.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A4V3G9
      Conserved Domains (2) summary
      cd12328
      Location:124 → 196
      RRM2_hnRNPA_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A subfamily
      cd12578
      Location:33 → 110
      RRM1_hnRNPA_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A subfamily

    3. NM_170293.3 → NP_733172.1  ribonuclear protein at 97D, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_733172.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A4V3G9
      Related
      FBpp0084462
      Conserved Domains (2) summary
      cd12328
      Location:124 → 196
      RRM2_hnRNPA_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A subfamily
      cd12578
      Location:33 → 110
      RRM1_hnRNPA_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A subfamily

    4. NM_001014673.2 → NP_001014673.1  ribonuclear protein at 97D, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001014673.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A4V3G9
      Conserved Domains (2) summary
      cd12328
      Location:124 → 196
      RRM2_hnRNPA_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A subfamily
      cd12578
      Location:33 → 110
      RRM1_hnRNPA_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A subfamily

    5. NM_001014674.2 → NP_001014674.1  ribonuclear protein at 97D, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001014674.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q02926, Q8IHB8, Q9VBA9
      UniProtKB/TrEMBL
      A4V3H1
      Conserved Domains (2) summary
      cd12328
      Location:124 → 196
      RRM2_hnRNPA_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A subfamily
      cd12578
      Location:33 → 110
      RRM1_hnRNPA_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A subfamily

    6. NM_001014671.2 → NP_001014671.1  ribonuclear protein at 97D, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001014671.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q02926, Q8IHB8, Q9VBA9
      UniProtKB/TrEMBL
      A4V3H1
      Conserved Domains (2) summary
      cd12328
      Location:124 → 196
      RRM2_hnRNPA_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A subfamily
      cd12578
      Location:33 → 110
      RRM1_hnRNPA_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A subfamily

    7. NM_001014675.2 → NP_001014675.1  ribonuclear protein at 97D, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001014675.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q59DT6
      Conserved Domains (2) summary
      cd12328
      Location:124 → 196
      RRM2_hnRNPA_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A subfamily
      cd12578
      Location:33 → 110
      RRM1_hnRNPA_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A subfamily

    8. NM_001014676.2 → NP_001014676.1  ribonuclear protein at 97D, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001014676.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q59DT6
      Conserved Domains (2) summary
      cd12328
      Location:124 → 196
      RRM2_hnRNPA_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A subfamily
      cd12578
      Location:33 → 110
      RRM1_hnRNPA_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A subfamily

    9. NM_001014672.2 → NP_001014672.1  ribonuclear protein at 97D, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001014672.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q02926, Q8IHB8, Q9VBA9
      UniProtKB/TrEMBL
      A4V3H1
      Conserved Domains (2) summary
      cd12328
      Location:124 → 196
      RRM2_hnRNPA_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein A subfamily
      cd12578
      Location:33 → 110
      RRM1_hnRNPA_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein A subfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A4V3G9 A4V3G9
    A4V3H1 A4V3H1
    Q02926.1 Q02926
    Q59DT6 Q59DT6
    Q6NR27 Q6NR27

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