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    htatsf1 HIV-1 Tat specific factor 1 [ Chanos chanos (milkfish) ]

    Gene ID: 115828567, updated on 17-Mar-2024

    Summary

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    Gene symbol
    htatsf1
    Gene description
    HIV-1 Tat specific factor 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chanos chanos
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gonorynchiformes; Chanidae; Chanos
    Orthologs
    human zebrafish all
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    Genomic context

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    See htatsf1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current fChaCha1.1 (GCF_902362185.1) 15 NC_044509.1 (12410815..12416038, complement)

    Chromosome 15 - NC_044509.1Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 13b Neighboring gene teleost multiple tissue opsin 3b Neighboring gene four and a half LIM domains 1b Neighboring gene solute carrier family 9 member 6b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044509.1 Chromosome 15 Reference fChaCha1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    HIV Tat-specific factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chanos chanos Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fChaCha1.1 Primary Assembly

    Genomic

    1. NC_044509.1 Reference fChaCha1.1 Primary Assembly

      Range
      12410815..12416038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030792593.1 → XP_030648453.1  HIV Tat-specific factor 1

      UniProtKB/TrEMBL
      A0A6J2WW04
      Conserved Domains (2) summary
      cd12281
      Location:130 → 220
      RRM1_TatSF1_like; RNA recognition motif 1 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
      cd12282
      Location:260 → 350
      RRM2_TatSF1_like; RNA recognition motif 2 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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