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    LOC4347507 proteasome subunit beta type-1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347507, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4347507
    Gene description
    proteasome subunit beta type-1-like
    Locus tag
    OSNPB_090505600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PBF1; OsJ_29931
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    Genomic context

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    See LOC4347507 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (23973146..23976709)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (19562259..19565710)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene probable auxin efflux carrier component 5b Neighboring gene uncharacterized LOC107278870 Neighboring gene ribulose-phosphate 3-epimerase, cytoplasmic isoform-like Neighboring gene uridine/cytidine kinase UKL1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Primary structural features of the 20S proteasome subunits of rice (Oryza sativa). Sassa H, et al. Gene, 2000 May 30. PMID 10854779
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in proteolysis involved in protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit beta type-1
    Names
    20S proteasome alpha subunit F
    20S proteasome subunit beta-6
    LOC_Os09g32800
    beta 6 subunit of 20S proteasome
    peptidase T1 family
    NP_001390795.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403866.1 → NP_001390795.1  proteasome subunit beta type-1

      Status: VALIDATED

      Source sequence(s)
      CF309734, CF309735, CI000066, CI741720
      UniProtKB/Swiss-Prot
      O64464, Q0J0L6
      UniProtKB/TrEMBL
      A0A516UX48, A2Z2V9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      23973146..23976709
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64464.1 GenPept UniProtKB/Swiss-Prot:O64464

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