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    ccnt1 cyclin T1 [ Sparus aurata (gilthead seabream) ]

    Gene ID: 115585263, updated on 17-Mar-2024

    Summary

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    Gene symbol
    ccnt1
    Gene description
    cyclin T1
    See related
    Ensembl:ENSSAUG00010004662
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sparus aurata
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Spariformes; Sparidae; Sparus
    Orthologs
    human zebrafish all
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    Genomic context

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    See ccnt1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current fSpaAur1.1 (GCF_900880675.1) 7 NC_044193.1 (4592515..4599544)

    Chromosome 7 - NC_044193.1Genomic Context describing neighboring genes Neighboring gene fibroin heavy chain-like Neighboring gene sodium-dependent multivitamin transporter-like Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene KAT8 regulatory NSL complex subunit 2 Neighboring gene NCK-associated protein 5-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_044193.1 Chromosome 7 Reference fSpaAur1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cyclin-dependent protein serine/threonine kinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription, elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cyclin/CDK positive transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cyclin-T1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sparus aurata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fSpaAur1.1 Primary Assembly

    Genomic

    1. NC_044193.1 Reference fSpaAur1.1 Primary Assembly

      Range
      4592515..4599544
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030423520.1 → XP_030279380.1  cyclin-T1-like isoform X1

      UniProtKB/TrEMBL
      A0A671U6R8, A0A671U6V5
      Related
      ENSSAUP00010009453.1, ENSSAUT00010010080.1
      Conserved Domains (1) summary
      COG5333
      Location:28 → 224
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

    2. XM_030423521.1 → XP_030279381.1  cyclin-T1-like isoform X2

      UniProtKB/TrEMBL
      A0A671U6R8
      Related
      ENSSAUP00010009457.1, ENSSAUT00010010084.1
      Conserved Domains (1) summary
      COG5333
      Location:28 → 221
      CCL1; Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
    Nucleotide Protein
    Heading Accession and Version

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